Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: KY131_Nipponbare_INS1203830

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-temp: KY131 | KY131

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr12

9159669

9162439

SV Length:

Query Start:

Query End:

Allele sv Count:

2754 bp

6113971

6116724

8

Gene_id	Chromosome	Start	End
LOC_Os12g11340	Chr12	6112751	6117836

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
KY131_FH838_INS1215250	Chr12	9159669	9162437	5548820	5551570	2751
KY131_LK638S_INS1217310	Chr12	9159669	9162437	5601680	5604430	2751
KY131_Nipponbare_INS1203830	Chr12	9159669	9162439	6113971	6116724	2754
KY131_R498_INS1216550	Chr12	9159669	9162437	5563779	5566529	2751
KY131_XL628S_INS1217270	Chr12	9159669	9162437	5593736	5596486	2751
KY131_Y3551_INS1215220	Chr12	9159669	9162437	5549143	5551893	2751
KY131_ZS97RS3_INS1216950	Chr12	9159669	9162437	5571052	5573802	2751
KY131_MH63RS3_INS1215230	Chr12	9159669	9162437	5552385	5555135	2751

>KY131_Nipponbare_INS1203830
ACCTTCTGCGAAATTGCGTTCATGAAAGAACATAGCTTTGTTATTGTTGCCCGGACATTGTCTGGGAGGATACCCCTTATTATAACTGGTAGCAGTTGTGTCATCAACACGTGACAGTCATGAGACTTTAGGTTTGTGAACTTCTTCTACTTCGTGCTTATTATTCGCTTTATATTCGTGGAGTATCCAGATGGTACCTTGATGCTCTCCAAGCATTGAAACATACTTTTCTTCTCTGCCTTGCTAAGAGTGTAGCTAGCTAGACTCAAGTAATGGATGCCTTTCTCCTTTGGTTCCGGGTGAAGGTCGCCGCGTTGTTCCATATGCTTCAGATCATTATGTGCTTCCATTGTTTCTTTCGACTTTCCATATACACCTAGGAAGCCAAGAAGGTTTATGCAAAGGTTCTTAGTGAGGTGCATCACGTCGATTGCGTGGCGGACGTCCAAGAATTCCCAATAGGGTAACTTCCAAAATATGGAGTTTTTTTTCCACATCGCCGCGTGACCATCTTCGCTCTCTATAGGCTGGCTGCCAGGGCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACACTGTTTTCCCGCTGCGATGTTTAGACTTCGTACGGTGGTCCGCCGTATGTTCAAAGTGCTTGCCTTTCTTCCGTACCGGGTAGTTTGCTGCAAGGAATCGACGATGACCCATGTACACAACCTTCCTACAGTGCTTAAGATACGTACTTTCTGTTTCATCCATACAGTGAGTGCAAGCCTTGTACCCCTTGTTGGACTGCCCGGATAGGTTGCTAAGTGCAGGCCAATCGTTGATGGTAACGAACAGTAGCGCTCGTAGGTTAAACTCCTCCTGTTTGTCCTCGTCCCACATGGGGACACCTTCCTTCTTTCACAACAGTTTAAGATCTTCGACCAGTGGTCTTAGGATCACATCGATGTCGTTACCAGGTTGCTTGGGGCCTTGAATAATAATCGGCATCATTATGTACTTTCTCTTCATGCATAGCCAAGGGGGGAGGTTGTAGATACACATCGTAACGGGCCAAGTGCTATGTCCGCTGCTCATCTCTCCAAAAGGATTCATGCCATCCGTACTTAAACCAAACCGTATGTTTCGTGCGTCCTTTCCAAAGTCTTTAAATTTTCTGTCGATGTTTCGCCACTGCGAACCATCTGCGGGGTGTCTCAGCATCCCGTCCTGTTGACGTTCTTCAGCGTGCCAATGCATCATTCTAGCATTCCCCTTGTTCCTGAACAAACGCCTTAGCCGTGGTATTATAGGGAAATACCACATCACCTTAGCAGGAATTCTCTTCTTCGTTAGCTGCCCGTCAACCTCACCTGGATCATCTCATCTAATCTTATATCGTAGTGCTTTACAAACAGGGCATGCTTCTACGTTCTCGTACTCCTCATCGTGATATAGGATACAATCATTCGGACATGCGTGAATCTTCTGAACTTTCAGTCCTAGAGGGCAGACTATCTTCTTAGCCTCGTACGTTATCTCGGGCAATTTGTTTCCCTCCGGAAGAATGTTCTTGACGAGTTTCAATAAATCGCCAAATGCCTTGTCACTAACACCTTTTTTGCCTTCCATTGCAAAAACTCCAGAGTGGTATCCAAATTTTTGTGCCCCTGCTCGCAACCTGGGTACAACGACGTTCTGTGGTCCTCTAACATCTTGTCCAATTTATGGGCCCCCTTTTCACTTTCGCAGTCCTCCTTGGCATCCTGCAACATCTGACCAAGATCATCCGCAATGTCGTTATAATCAGCATCTCTGTCCTCCTCGCCCATTTGATTTCCTTCAAATCCAGCGTACTGAGCAAAGTCTGGAATATTGTCGTCTTCCACTTCATCTTCTTCCATTTCAATCCCTTGCTCTCCGTGGGATGTCCAACAATTATAGCTTGGCATGAACCCCGACTCAAACAAGTGGAAATGAATAGTCCTGAATGCAGAATACTCCTTCTGATTTTTACACTTATTGCATGGACAACAAATAAAACCCTTCTGCTTGTTAGCTTCGGCCACTCTCAAAAAATAATGCACGCCGTCAATAAACTCTTCGGACCGCCGGTCAGCGTACATCCATTGCCGATCCATCTACATGAAATGAAAAAAAATCGTACACAAATAATCATTCGTACAATAATGACAGTCATACAATAATGATAAAATAATAACAAACTCTTTCAACAGTCATACAATAATGACATATTATTATTCATACAAAAATTATAAAATATTCCACCAAATAATTCTTATTTATTATTTTTTAAGTTTTAAATTCTTTTAATTTTCAATTTAGTTTGTTTTCTTTTATTTAAGATTAACTTTCACTATATTTTCCTACTCAACTATTTTATAAAACCTTATTTAGCAAATAAACAAAATTTCTATATATTCTTTCTTTTCCCACACAAATTTTCTCTCTCATCAACTTACAACAAAATTTTTGAGACAAAAAAGTGTGCAAAACATAGCTCCAAATGTAATATGACCAAAAAAAAACATTGGAGGATGAAGTTGCTAACCTTTTAGGCACCTTCGATTTGTATATAATCACCAAAGTAAATTCACTATAAATTTTGGCATGACCTCCCCTCTTTTTTGAAGAAATTTTGAAGCTTGCTCGGGCTGGAGTAGGAAGAAGACATATATAAAGGGGTGGGACTTTAGTCCCGGTTGGTGTTACCAACCAGTACTAAAGATCACCGGGAATTATAGTCCCGGTTGGTAACACC