Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: KY131_127518_INS0452040

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-temp: KY131 | KY131

Os XI-3B1: KHAO YAI GUANG | Os127518RS1

Chr04

23178850

23182794

SV Length:

Query Start:

Query End:

Allele sv Count:

3880 bp

28880930

28884809

16

Gene_id	Chromosome	Start	End
OsKYG_04g0021830	Chr04	28876755	28885779

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
KY131_125827_INS0450320	Chr04	23178850	23179139	33752956	33753241	286
KY131_125827_INS0450320_1	Chr04	23178850	23182794	29657890	29661768	3879
KY131_127518_INS0452040	Chr04	23178850	23182794	28880930	28884809	3880
KY131_127564_INS0454840	Chr04	23178850	23182794	29157054	29160933	3880
KY131_D62_INS0451120	Chr04	23178850	23182794	28340582	28344462	3881
KY131_DG_INS0452030	Chr04	23178850	23182794	28727461	28731339	3879
KY131_FH838_INS0448820	Chr04	23178850	23182794	28797191	28801069	3879
KY131_FS32_INS0447330	Chr04	23178850	23182794	28420266	28424144	3879
KY131_G46_INS0450150	Chr04	23178850	23182794	27886940	27890818	3879
KY131_G630_INS0449000	Chr04	23178850	23182794	28922502	28926380	3879
KY131_II32_INS0447520	Chr04	23178850	23182794	28839351	28843229	3879
KY131_LK638S_INS0450680	Chr04	23178850	23182794	28837617	28841498	3882
KY131_TM_INS0450370	Chr04	23178850	23182794	27029296	27033174	3879
KY131_Tumba_INS0453650	Chr04	23178850	23182794	29350371	29354248	3878
KY131_Y3551_INS0448710	Chr04	23178850	23182794	29144065	29147944	3880
KY131_MH63RS3_INS0448810	Chr04	23178850	23182794	29403750	29407628	3879

>KY131_127518_INS0452040
TGTAGCGCCCGTTCCGTCGTGGCGCCTAGTGGGAAAATTATCTCTTAAAAACCCTAATTGCGAAATTTGTTTCTTTGCTTGTTGTCTAGTGTCCATGCCATCTGAAGATCTCAAATCCCCGATATATCGTCGAGTTCAATTCCGAATCTAAATCCTTCCAAATCAAATCCCTCCGCAAAAGTCTATTTTGCCTCCCCCGGGGTCGATGGGCCGAATCTCTTTCGGCCCATCTCCCCCTCCCTCCCGGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTTCCCCTCGCTCTGCCCGCGCGTGCGCGAGCGCCGCGCCGAGCGCCCCCTCCCCCTCGCTCTCCTTCTCCCCATCCCTGGCGAGCTCCCCGCCCGCGAAGCCGGCCCCCGCGCGCCGTTGTTCGCGCGCGCGCCCGCGTGGTTGCCACCCGTGCCGCGCCGCCTGCGCCGTCCGCGTCACCCGGCCCCGTTGGCCCTGCCGCGCCTGCAGCCGCTTGGCCCCGCAGCCAGCGCGCGTGCCCGAGCCGAGCCACTCAATCCGCCGCGCCTCCCGTTGCAAGCCGCGCGCGAGAGCCGTGGTGGCCGACCGCCTGGTCGCCACCATCGTCAGCGCCTGCCCGCGCCTGTCGCCCGTGTCACCGCCTCGCCGTCATCACCGTCGTCATCGCCTCGGCCCCGCCACTCCGCGCGCAAGCCGCCAAGGGACGGAGGCAGAGCCCCTCCTCCCTCTACCACGTCGCCCCCGCTCCCCTCCTCCTTTTCCCAAAGAGGCAAGGGGCGAGCCCCCTTTCTCTCCCTCATTTTCCCCTTTTTCCCCCCGCCGGCGTCATCCTCCCTCCGTCCTGTCGCCGATTTGGCCGCGAGCGCCGAGCGCCAGCTCGCGCCTTGACCGCCCAAAGTCGGTTTCCAAACCGACATTGCCGCCCTTTAAACCCAGGCGCCCTCCCTTCCTCTTTCCCCCCAATCCTCCCCGTTTCTCGTCCGCGCCATTGCCGCCACCTCCTGTGCTCTGTCTCGCCTCCGCCGTTCATCGCCAAGCACCGGGAGAGCCGGTGCGTTCGTTGACGCGGAAGGGGACTCCGGGCGCTCGTCTTCCTCCTCTTCCCCGGCCCGAGGCCGGAGAGATCACTCCCGCGCCGTCGGCCTCTCGTCACAGCGCCCCGCCTCATCTCGGTAGTGCCTCCCTCCGTTCTTCCTCCTCGTTCCATCTTCCCCCCTTAGTTTTCGGTAGTAGCACGAGTAGCCTCCCCGTAGCTAGCCGGCGCCGCCCCGACCATTGCCGCTGCTCGCCGTGTGCCCGCCACCGTCGCCGCCCGTGCTTCGTAGCACCCGCTCGTCGCCGGCCTCGCTCGGCGTAGCTCCGCCTAATCTGACGCTAGCAACGAATTCCCGTAGCCGCGTAGATGCTCTCACCGCCGGGAATTGGCCCCTCGTGACCTCGTCGCCGTTTCCCCCTTTTCCCTCCGCCGGGCGCCGCTGCCGCAATCCGCCGCCGACGGACTCCCTCCGGCGAATCCAAGCCGTTGGCTCGCTCCCTCTCATTCTCCCTCGTCATCCCGGTGTACGCCCCGTCGCCCCTCATCGTCGCAAGGCGTCCCGGAGAAACCACCGCCGCCCGCCGTCCATTCGCGGCCGGCACCTTCGTCTTCCTCCCGCCAGCCCGCGTGGCAGCCACGTAGGCGCCACGTCGGCGCCAGCTCGGCCGAGATCGGATCGGGCCGACCCCGGTCAGCCCCTCCCGTGCGCGCGTTCCACCGCGAGCCGTGAGGCTACGTGTGGGCCCACCGCATCCGTTCCACCGCGAACCACGCGCGTGCACCGCATCCCTTCCCCGCCCGTGCGCGTGCGCCGCGTGCTCGCTCAGCACGGTGAACCGTGTCACCGACAAGCGGGTCCTACCCGGGACCACGCGTGGTGAGCCCGGTCCACCGGCCCTCCCTCTCCTCCCCTTCCGCGCGCGCGCTTGGGCTGCCTTGGGCCGGTCGGCCCATTTAGCTCGGCCGGACCGCTCCGTTTCTCTCGGGCCGCGCCCTAGCCGCCCGAGGAAAAGTATATTATCCCTCCCTCTTTTCTTTTCTTTTTCAAAAAGGATTTAATTAAATCCTTTTCCTTTAGACCAAAAATCCAATAATCTTAGAAATTCAATATCTTCCCAACCGTAAATCCGTTTGACTCCGTTCCACTTCCAAAATTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTAATAGGGCTTTATTTTCGCCGTTTGTTGAGTTGTCCCGTTTCGCGTGTAGTTTCGGAGCCCGAAGACCCGCAGTGCGAGGATTTTGAGGATCAAGCTCCAGATTTCGAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATTTGAATTTAATTATATTGCTTGAAAAATATTATGCATTGATAGGATCGCACTTAATCTGTTTGTCCCGTCTGCAAGGCAGATTGGCGGACCTACCTAGTTTGTTGCATTTGATCCTTCCTTTGTTAATTGTTATACCATGTTCCCTTGTAACCACCCAGTTGCGCCTCGGGAATCGTGCACTCTGTGCGAGTACCGACGGTCGCCTTCAAACTTCAAATCTGAGTAACAACTTGGGTTTTACAAAAGACTTGGAAAACCCGACACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAACCGCGGACCGGGGAACGTACCGGGTGTACGGTTTTCCCGCTCTTGCACCTAAGGACCGTTTCCTTAGAATTTCATCCAAACATAAGACAAGTACGACCACATGGGTGGAATGGGACACCCCTGGCTGAGTAACTAGCTTATCAGGGGAGCCTTGATGCCGAGAGACATGTGGATTCGCCGGGGTGGTGTCGGGGAGGACCCCTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTCGGCATATGGTAAACCTGTGTCGGCTTTGGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGTGGCTGATCCCCACGGGCTGGGTGATCCGGGTTAGTAATGTCGTGTGGGTAAAGTGTATCCCCTCTGCAGAGGTTAACAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTCCTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTGTTGTGGAAAGGGGTTCGATGTTTGAAAAATCTGCAGCTGATGGGATCAGCTAGGCCCGGGTGGCCGTTTGAAAGTTGTTGGCCCGGGTGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGATTCAATTCTAAAGACTGATACATTGCACATACTCCGACCGGACAAGACGCACTGTCTTATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTTCAGAAAGGAGTTCAAATAAAATCAATTGTAAAAACAACAGACTTTTCTTGAAGCCTGCATTAAACACTTATTTCCCATGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATAAATAATCCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAGGAGTTCTTCCAAGAGCAAGCCGGCTACGATGAGTATTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGTTGTTTGGTCCAAGTCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATAATCCGTCTTCCTATGATAACAACACTATTTTCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAGTTTCGGTCGGTACTAGTCCGGGGCGTGACA