Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: J4155_R9311_DEL0435060

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

13994008

13996542

SV Length:

Query Start:

Query End:

Allele sv Count:

3109 bp

28987438

28990546

20 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
J4155_125619_DEL0434090	Chr04	13994008	13994922	28679227	28680141	915
J4155_125827_DEL0435920	Chr04	13994008	13996542	29653818	29656926	3109
J4155_127652_DEL0436960	Chr04	13994008	13996542	27502175	27505270	3096
J4155_127742_DEL0434200	Chr04	13994008	13996542	28906685	28909793	3109
J4155_D62_DEL0433070	Chr04	13994008	13996542	28336512	28339618	3107
J4155_G8_DEL0434750	Chr04	13994008	13996542	28615902	28619007	3106
J4155_HZ_DEL0434040	Chr04	13994008	13996542	29078352	29081460	3109
J4155_II32_DEL0435050	Chr04	13994008	13996542	28835283	28838387	3105
J4155_IR64_DEL0433680	Chr04	13994008	13996542	27264208	27267316	3109
J4155_LK638S_DEL0432700	Chr04	13994008	13996542	28833545	28836653	3109
J4155_R498_DEL0432160	Chr04	13994008	13996542	27798869	27801977	3109
J4155_R527_DEL0431980	Chr04	13994008	13996542	28379530	28382638	3109
J4155_R9311_DEL0435060	Chr04	13994008	13996542	28987438	28990546	3109
J4155_S548_DEL0431570	Chr04	13994008	13996542	27860587	27863695	3109
J4155_TM_DEL0433940	Chr04	13994008	13996542	27025224	27028332	3109
J4155_WSSM_DEL0434640	Chr04	13994008	13996542	28467608	28470715	3108
J4155_XL628S_DEL0435050	Chr04	13994008	13996542	28960673	28963781	3109
J4155_YX1_DEL0434390	Chr04	13994008	13996542	27362265	27365373	3109
J4155_ZS97RS3_DEL0434690	Chr04	13994008	13996542	29174618	29177726	3109
J4155_MH63RS3_DEL0432490	Chr04	13994008	13996542	29399678	29402786	3109

>J4155_R9311_DEL0435060
TAGGGCTGTCAAAAAAGCTCGGAGCTCGCGAGCAGCTCGAGCTCGGCTCAAGTTCGACTCGGCAAGGATTCGAGCCGAGCTCGAGCTTGTCTCGAAGCTCGCGAGTTCTACCGAGACGAGCTCGAGCTATTCGGCAGAAGCTTGAAATTTTCACTCCCGCTACCCATCCCAATTTCTCCCGCACTCCAATTCCAAAATCCTACCACCAACAGCAGTCCATCACCTAACCATTTATTTCCCTTATATCCCCATCCCGTATCCAAACCCTAGCTCATTTGCTCTCTTCCTCGAAACATTTCTCTTCTAGATCTACAATCCTAGGCTGCTCTAGTGCTCCACTGACCACTGCTGTGGATCTAGCCAAGCACCGTCTATCCTTCGCCTCTCCTGTCCAGGAAGAACCCCATGGAGGACAGCAGCAGCCCACCGCCTCCGCCGTGAGTGACGAACCGACGACTCGGATCTGAGTAAGTTTCCTCTTCTTTCTTTGTTTCACATTTTTATTTCTTTTGCACCCACATGTATCTAGGGCCCTACATGTATTAACTGTGTAGTGTTTAGTTGCTTGATGGATGTTATTGATTTACATTGAATTTTATGGACTAGGTGGAGACATGGAGTAGTACTTATCTTGCTGTTCTCCTCTTCTGAAGAAAGACTGAAGGTTGCAGAACACCGTGTGTTTGCCATTTGCCAAGGTAAATTGATGGCAATGCTTTTCTTGTTGTACTTGTTTGATTCCTTCCCTTGTGCAGAATATATATTGATAGCAGTTGGTATTTTTATTTTTTGTAGATGTCTGTAAACCTGCAAAGACAGCTATCTGTAGAGATCGAGTCACCGAGCAATAGAGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCTATGAGTTGCCATTTTGCCTTGTGGAGTATACATGGTTTAATGTTTTGCTAAAGAGGCTAAACCCTTCTTACAAAAAGGTCTCTAGAAATACCATTAGAAGTGATTGTATGAGGCTTTATGAATCTGAAAAAGAAAAACTGAAGAGGACTTTCAAAGATGTTAGAAAGATAAGCCTCACATGTGATCTTTGGACCTCTAACCAAACAATTTGCTACATGAGCCTTGTTGCCCACTACATAGATGCTGATTGGTCAATGCATTGTCGTGTTATTAACTTTCTTGAGTTGGAGCCTCCACATACTGGTGTAGTTATTGCTAATGCCATTTCTGATTGTCTTGCTTCATGGAGAATTGAGGACAAGATAGCTAGCATCACATTTGACAATGCCTCAAGTAATGACAGTGCTGCTAACCTGTTGCTTGCCAAGTTTACAAAACGTGGTTCACTTTGGTTTTATGGAAAATTCCTTCATATCCGCTGTTGTGCTCACATTCTGAACTTAATTGTCCAAGATGGTCTGGCTGTGATTAAGCATATAATTGACAAAGTTAGGGACACTATCAAGTACATCAAGAAATCAAACAATCGAGCATACAAGTTCAGTGCTGATATTGATTCTCTCAACCTTAAAAGTGACATGGGTTTGGCTATTGATTCCTGCACAAGGTGGGGCTCAACCTTCAAAATGCTGCAATCTGCATTTTTTTATAGGTCTGCCTTGGATGTATATGCTGCAGGAGATGCAAACTATAGGTGGCTGCCAACACCAGAGGAATGGAATCTATATTGTGAAGTCAATGATGCCCTTTCTGTCATTCATGCAGCCACTGAGGAGTTCTCAGGTTCAACCTACCCAACATCTAACCTTTTTTATTCTCACATTGTCGATATTAAGAGAGTACTAGGTCAGTTGTTGAAGTCCAAAGACCCAATTCTTAAAGAAATGGCAAATGCAATGCTTGAAAATTTTGAGAAGTACTGGGGCCCAGAATGCAATACTTTGTTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACTGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCACATCAAAGGAAAATGATGCCACCACTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTCTGCTGCTAGCCAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTTGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTTGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCAAGTGATTAGTGATTATCGCAGCTCTTTACTCCCATCAACAGTACAAGCTTTGGTGTGTACATCTAGTTGGATTAGAGGAGGCCACCACAAAAGCACATATTTAGTAAGTTCTTATATTTTCATGTTTCTAACCAATTAATAGAGATACACAATCTAATAATCTATGTTTACTTGTTTGTTGCATACTAGGAGGATGATACTAATTCTATTATCCTTGTCCCAACTCAAGCTTCAACTGCAAATTCGGTTGTGGGCAGCAATTAGACTCGTTTGTCAGGTATATGTTTGAGGTTATATAAATTATCTATTGCTACCATATCAATTCCTCATCATTGATGAAACATTACCTATAATCT