Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: J4155S_IR64_DEL0436890

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

14497000

14497655

SV Length:

Query Start:

Query End:

Allele sv Count:

677 bp

27267310

27267986

22

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
J4155S_117534_DEL0438990	Chr04	14497000	14497655	26889743	26890419	677
J4155S_125619_DEL0437770	Chr04	14497000	14497655	28680135	28680801	667
J4155S_125827_DEL0439570	Chr04	14497000	14497655	29656920	29657596	677
J4155S_127652_DEL0439340	Chr04	14497000	14497655	27505264	27505940	677
J4155S_127742_DEL0437750	Chr04	14497000	14497655	28909787	28910463	677
J4155S_D62_DEL0437270	Chr04	14497000	14497655	28339612	28340288	677
J4155S_G8_DEL0437950	Chr04	14497000	14497655	28619001	28619677	677
J4155S_HZ_DEL0437550	Chr04	14497000	14497655	29081454	29082130	677
J4155S_II32_DEL0438220	Chr04	14497000	14497655	28838381	28839057	677
J4155S_IR64_DEL0436890	Chr04	14497000	14497655	27267310	27267986	677
J4155S_LK638S_DEL0436390	Chr04	14497000	14497655	28836647	28837323	677
J4155S_R498_DEL0434870	Chr04	14497000	14497655	27801971	27802647	677
J4155S_R527_DEL0435060	Chr04	14497000	14497655	28382632	28383308	677
J4155S_R9311_DEL0438850	Chr04	14497000	14497655	28990540	28991216	677
J4155S_S548_DEL0434860	Chr04	14497000	14497655	27863689	27864365	677
J4155S_TM_DEL0437430	Chr04	14497000	14497655	27028326	27029002	677
J4155S_WSSM_DEL0438560	Chr04	14497000	14497655	28470709	28471385	677
J4155S_XL628S_DEL0438870	Chr04	14497000	14497655	28963775	28964451	677
J4155S_Y58S_DEL0426250	Chr04	14497000	14497655	28881631	28882297	667
J4155S_YX1_DEL0438230	Chr04	14497000	14497655	27365367	27366043	677
J4155S_ZS97RS3_DEL0438160	Chr04	14497000	14497655	29177720	29178396	677
J4155S_MH63RS3_DEL0435760	Chr04	14497000	14497655	29402780	29403456	677

>J4155S_IR64_DEL0436890
ATAATCTTTGCACATGGTTTCAGATATAACTTTACGAAACATTAATGCATGCATATAGCATAGCATCAACAATTAGTTTGAAGAAAGTGCTTGGAGGTTTCACATTGGCGTACTGCCATTGCCAATAGTGGAGTAAATATTTTGTGACAGTTGAAATTTGAAGTACGCTGTGTTAGTAGTATAAGTAATATTTAGATATTAGAGCTTTTAGATGGAACATATGTTGGGAACTTCCGGTGGGCTACTTTTGATGTTAATTGATGCTCTATGTTCTTTCAAGTCATTGACACATGATATTGTAATGTTTCTTATGGTGTTATACACACCGGTCTATTATAAAGTAGTAATCCTATTATGACTTATGCACTACTATGAATTTGTAATCTTTCTAGTATATACCTGTCGAGAAGCTATTATATTCTATTATGAATTTGTAATCCTACTTTGGCTTGTTAAGAAGCTTTTATTGGGAGATAAGTTCAGATTGCTGAAGGAAACAGTCTTAACGAGCTTCTACGAATCGAGCTCGAGTCGAGCCGAGCCTTGATCGAGCTCGAACCGAGCCTACCTTCAAGCTCGAAGGTAATGCTGGGCTCGGCTCGAGCTCGGCTCGAGCCTGTACTGAGCTCGAGCTTAGGTAGGTAAGCTCGCTCGAGCTCAGCTCGTTGACAGCCCTA