Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: J4155S_127742_INS1119320

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-adm: Jing4155S | J4155S

Os XI-1B2: PR 106 | Os127742RS1

Chr11

13213039

13213052

SV Length:

Query Start:

Query End:

Allele sv Count:

17046 bp

13277724

13260679

10 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
J4155S_117534_INS1115890	Chr11	13213039	13213052	12625428	12608370	17059
J4155S_127742_INS1119320	Chr11	13213039	13213052	13277724	13260679	17046
J4155S_G630_INS1114450	Chr11	13213039	13213052	13536118	13519075	17044
J4155S_R498_INS1116070	Chr11	13213039	13213052	13029282	13012239	17044
J4155S_R527_INS1122310	Chr11	13213039	13213052	13324520	13307475	17046
J4155S_R9311_INS1121180	Chr11	13213039	13213052	13207762	13190747	17016
J4155S_S548_INS1122470	Chr11	13213039	13213052	13230495	13213450	17046
J4155S_Tumba_INS1117360	Chr11	13213039	13213052	13061669	13044633	17037
J4155S_YX1_INS1114380	Chr11	13213039	13213052	12800452	12783415	17038
J4155S_MH63RS3_INS1119570	Chr11	13213039	13213052	13309285	13292240	17046

>J4155S_127742_INS1119320
tggtggggcactgcgtgtcacgcccagaaattcccgaatagaattccaggcagaatgtgcattaaaatccccgtccaggaccagccggggtacacaaacgacaatgttgacatacagatccacgtcttacaaacatcataagagtcttacagaaatgcagcggaaaacaaaagaaactggagctaagccttgactaaactgcagcaggaacaccactccacaggcatcctcgacggcacggacgaagcctactcctcggagaaaccttcatctgacccgtactcaaactctggggttgggggaaaagtagagcaagactgagtactacccactgtactcagcaagtcataccggaatagaggtatgatgcagggaatcatcaaagaaaagctaaagtggttcatttgcataaagcgagcattgataaacagagattgaaagatttaaacagttgtaataagtaattaagcagtattaatcatccactgtccaacgctacaccacgttgcaacaggcccaaccatccacctaaactatccaaattaaaggattacactaaagtgagactaatcacggtgaatctggttgaccgcccataaccgtgggcacggctattcgaatagttttactctgatcagaggtgtacaactgtacccacaagacacagccccacgacacgtttccgtgcgccgacatgccaccacgacataccggaaagaggccgtgacaggacccttcgcataaccccctctagccaagcacaccacacctcaggtttcacccccgtccccagcaggcgacgggcagtcccctctcgtgcctaggtgaatccggaagcgacagaggccgtcgcagggcccgccccgctccatcacgcccacccttgcctggatgcgtcgactagaggaaagctacactacaagcccagccgttgcccacgctggcttgtggtaagtacgataagttcttccagggcatcccgcgaaccggtccttaactgccatgggtgcgaccagcaaaaccatgcacccacagcccaccatgtggttcattttaattaaccaacaccagagcggtggtactaaaccaacattatcatatagacttatagtttaggttttatatgagattccccattgtgtgctagttgaactaggcatggctaagcaattcctagtcctaactctaatcatgttataacccaagctaacaaaggagcatggtatcaaaattatggctgtaacagtaggtaaccatcccctagtgatattataaaacaatgcagtatttgaaaggaaacagtagagcatttgcaatataggagcaatatgttcaagtgacaagcatgacttgccttgctctgctgctggagggacttcggcgactatctcgaagtacaccggagcgtcggagggatcggaatctagcgacatacaaagcaaacattgcaaacaggctataagactactgaaacagagaacaaaaccatttttaatggattctacacatttttcttgatttactgagacttgaatggacttaaacggagctcggatgaattagctatgaattttagaagattcactgtgtttattactataaaagaaatccttaaataaattattgcgcaataaactccagggctgacgtcagcgcggggcggcgcggcgccgacaagcggggcccaccggtcagcgacacggggagagagagaaggggcggcggctcgcgggcccaccggtcagcggcacgggggaaaaggatggggcggcggcgccacgtggcggccgaaccgacggccccgatctacccaagggtagatcggacggcggcgggacctcgcggccggggcgcgcgggcgcggcgcgagacggcggcgaccatggcgccggcggcgcggcgctcacacggcggcgcgcgcatgcggcagcggcgcaaggcgacgatcgacggcgaccgaccggcggcggagagcggcggctagaggaggagcggcggctacgcggctaagcggcgacgcggcggctaagcggtgcgggagagagggaaaacgaggagggggacctcaccgacaccgatcgacgacggcgggcgacggaggatgacggcgacggcgggacgagctccggagccccctaacgaacaaaaggagaggggttagagggagcgaggagagtgcgagagagcgagagcgccggccgaaggcggcggccatggcgccactcaccggcacacgacggggacggctctccggcgacggacctcgacgaaagaggggtggacggggtagatcttgaccccgcgaacctaacggcggcgtcggcgcaagacggcggcgagcctagcggcggctagcggcggccggagtagcaaaagcggcggcggcgggtggttgcacggcgcggaggcgatggggagcacgggagggatcggcgaaatggggaaaaagagagagagggcggcggcgatgcttaaaaagggggagaggggtccggacgtggccgggagcggcgggaatcgccggccgacgtgggggagtggggaggagagagaggcgggattcgtttttcgaatcccggccatctcgggcgcgggcgcgaatgggagagagaggggaaagggcgcgggggatgcggcgcacgcgcgggcgtggccgacgtggcccgggagcggcggagacgtgggcacaacggccgttacggcgcggcggcgcgggcgggatcggcgggaggtgggggaaggacccgacaggtgggccccacctgtcggcgaccccgagagaggaggcgggcggccggctgtcgggctgggcctcggcctgcggccggcccagcaaggaggagggggaggaaagagaggggaaatgggccgacggcccatttaaccaaaaggaggaaaacgagggaaaaagaaaaagaaaaaggaaaaaggattttccttggaattaaaaattgcacttgctcaattttaattggttaaaattatttctagagctctgaaaattccactaaaaatcctgttaatgaatttcgacatgtagaactcaagaaaaattccacatgtcaattccgattattatttgcattattttcttagggttttctcctgatttctccagcattttcttagggtcttttataaattacaatttttggcttaggaggagaactacagggtgtgacaaacctacccccccttaaacggaatctcggccccgagattcggaggagctggtgaagaggtccgggtgggcggctttcaactcatcttccctttcccaggttgcttcctcttcggaatgatgactccactgaactcggcaaaacctggtgaccttgtttctggtcctcctttcgctgatatcaagtatgcgaaccgtcttctccacataggtcaggtcctcctggatatcgatgtgttccgaatcagcctgttcctcaggtacccttaagcacttctttagttgagaaacgtggaacacgtcatggatgccgatcatgttggatggaagttctagctgataagcaacttctccccttcgttccaaaattttgtatggtcccacgaagcgtggtgccaacttgcctttcgtctgaaaacggtgtactccccggagcggagtgacacgaaggtacacgtaatctcctgcctcgaaagtgagctcccttcgacggttatccgcgtagctcttctgtcgagactgggcaatcctcaacctttccctgatgattctgactttctcttctgcttccgctaatacttctgttccgaacagttgacgttcgcccgtctgatcccagaagagaggtgtgcggcacttccggccgtataacgcttcgaacggtgccatctgtagactggcctggtagctgttgttgtacgagaattccgcatatggtaagcttttatcccaagccccaccaaaatcaagagcgcaagctctcagcatatcctccaagatttgattgactcgctcggtctgaccatcagtttgcgggtgataggccgtgctgaaatttaaacgggtccccaactcttcctgcagtttctgccaaaattttgaggtgaactgactacctcggtcggatactatcttcctgggtaccccatgcaaacacatgatccttgcgaggtacaactctgccaatctctttcccgtataggtggtatgtactggtataaagtgagccaccttggtgagtcgatccacgactacccagattgaatcatgtcccgatgatgtccggggcagtcccgtgataaagtccattccaatctcctcccacttccattccgggatttgaagaggttggagtaaacctgctggtctttggtgctctgccttcacttgttggcaaacatcgcagagtgcgacgaattcagctatttctctcctcatgctgacccaccaaaacttttctttgaggtcttgatacattttagtactgcctgggtgaatggagtactgggtctgatgagcttcggtgagtatcagatccttcaattccttgtcgtccggtacacacaatctttctcccatccagattgtgccatgctcatcctcaaggaaatcccgagcctttccgactctcatgttctttttcagttctgctatttccggatcatttacttgagcggctctaacttgatccacgagcgtaggccgtgcctccagagcggctacaaacccgtgttcaacaactcccatgttgagatgttcaagctcctgccgcaattcctcacacatgctctcgatgcatagagcagtgcagtaacttttccggcttaaagcgtctgccaccacattggccttacccgggtggtagtgaatactcatgtcatagtctttgattagctccaaccatcttcgttgtcgaaggtttaggtccggttgggtgacttttatggtccgtatatacttcgcagcggttgccgatcagatagtgcctccagattttcaaagcatgaaccactgctgccaattctaagtcatgagttgg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