Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: II32_XL628S_OTH1203110

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os XI-1A: II32 | II32

Os XI-adm: Xiangling628S | XL628S

Chr12

5762946

5765063

SV Length:

Query Start:

Query End:

Allele sv Count:

529 bp

5686768

5687296

8 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
II32_Basmati1_OTH1208540	Chr12	5762946	5765063	6101678	6102206	529
II32_FH838_OTH1203110	Chr12	5762946	5762950	5550428	5550056	373
II32_LK638S_OTH1202970	Chr12	5762946	5765063	5694716	5695244	529
II32_R498_OTH1203030	Chr12	5762946	5762950	5565387	5565015	373
II32_XL628S_OTH1203110	Chr12	5762946	5765063	5686768	5687296	529
II32_Y3551_OTH1203100	Chr12	5762946	5762950	5550751	5550379	373
II32_OglaRS2_OTH1211490	Chr12	5762946	5762950	17768512	17768884	373
II32_MH63RS3_OTH1203200	Chr12	5762946	5762950	5553993	5553621	373

>II32_XL628S_OTH1203110
CTTGCAATGGAAGGCAAAAAATGGTGTTAATGACAAGGCATTTGGCGATTTATTGAAACTCGTCAAGAACATTCTTCCGGAGGGAAACAAATTGCCCGAGACAACGTACGACGCTAAGAAGATAGTCTGCCCTCTAGGACTGGAAGTTCGGAAGATTCACGCATATCCGAATGATTGTATCCTATATCACGGTGAGGAGTACGAGAACCTAGAAGCATGCGCTGTTTGTAAAGCACTACGATACAAGATTAGACGAGATGATCCAGGTGAGGTTGATGTGCAGCTAACGAAGAAGAGAATTCCTGCTAAGGTGATGTGGTATTTCCCTATAATACCACAGCTAAGGCATTTGTTCAGGAACAAGGGGAATGCTAGAATGATGCGTTCGCACGCTGAAGAACGTCAACAGGACGGGATGCTGAGACACCCCGCAGATGGTTCGCAGTGGCGAAACATCGACAGAAAATTTAAAGACTTTGGAAAGGACGCACGAAACATACGGTTTGGTTTAAGTACGGATGGCATGAAT