Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: II32_TM_DEL0424880

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

13887249

13889208

SV Length:

Query Start:

Query End:

Allele sv Count:

1951 bp

27033252

27035202

39

Gene_id	Chromosome	Start	End
TMG0411812500.01	Chr04	27033233	27034144

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
II32_02428_DEL0437690	Chr04	13887249	13889156	28075461	28077361	1901
II32_117425_DEL0426880	Chr04	13887249	13889156	26494687	26496587	1901
II32_125619_DEL0415350	Chr04	13887249	13889156	28681137	28683037	1901
II32_125827_DEL0421160	Chr04	13887249	13889208	29661846	29663796	1951
II32_127518_DEL0414140	Chr04	13887249	13889208	28884887	28886837	1951
II32_127564_DEL0430080	Chr04	13887249	13889208	29161011	29162961	1951
II32_127742_DEL0410900	Chr04	13887249	13889208	28914733	28916670	1938
II32_128077_DEL0432200	Chr04	13887249	13889156	26354606	26356506	1901
II32_132278_DEL0437460	Chr04	13887249	13889156	27559521	27561421	1901
II32_Azucena_DEL0434980	Chr04	13887249	13889156	26276915	26278815	1901
II32_Basmati1_DEL0433950	Chr04	13887249	13889156	26044443	26046343	1901
II32_CN1_DEL0426550	Chr04	13887249	13889208	28311983	28313933	1951
II32_D62_DEL0416680	Chr04	13887249	13889208	28344540	28346490	1951
II32_DHX2_DEL0436530	Chr04	13887249	13889156	26947672	26949572	1901
II32_G630_DEL0412510	Chr04	13887249	13889208	28926458	28928408	1951
II32_G8_DEL0404390	Chr04	13887249	13889208	28623945	28625882	1938
II32_HZ_DEL0411040	Chr04	13887249	13889208	29086400	29088337	1938
II32_IR64_DEL0426030	Chr04	13887249	13889208	27272258	27274195	1938
II32_J4155_DEL0433120	Chr04	13887249	13889156	27223923	27225823	1901
II32_J4155S_DEL0434890	Chr04	13887249	13889156	27791828	27793728	1901
II32_Kosh_DEL0437950	Chr04	13887249	13889156	27744207	27746107	1901
II32_KY131_DEL0436400	Chr04	13887249	13889156	28172783	28174683	1901
II32_Lemont_DEL0435390	Chr04	13887249	13889156	27076944	27078844	1901
II32_LJ_DEL0436930	Chr04	13887249	13889156	27075455	27077355	1901
II32_NamRoo_DEL0438520	Chr04	13887249	13889156	28031648	28033548	1901
II32_Nipponbare_DEL0436760	Chr04	13887249	13889156	27686717	27688617	1901
II32_R498_DEL0418280	Chr04	13887249	13889208	27806917	27808854	1938
II32_R527_DEL0417970	Chr04	13887249	13889208	28387578	28389515	1938
II32_R9311_DEL0413940	Chr04	13887249	13889208	28995439	28997376	1938
II32_S548_DEL0418610	Chr04	13887249	13889208	27868635	27870572	1938
II32_TM_DEL0424880	Chr04	13887249	13889208	27033252	27035202	1951
II32_Tumba_DEL0428630	Chr04	13887249	13889208	29354326	29356276	1951
II32_WSSM_DEL0411530	Chr04	13887249	13889208	28475655	28477592	1938
II32_Y3551_DEL0419470	Chr04	13887249	13889208	29148022	29149972	1951
II32_Y58S_DEL0419450	Chr04	13887249	13889156	28882633	28884533	1901
II32_YX1_DEL0416750	Chr04	13887249	13889208	27370313	27372250	1938
II32_ZH11_DEL0437700	Chr04	13887249	13889156	27233580	27235480	1901
II32_OglaRS2_DEL0443460	Chr04	13887249	13889208	24355235	24357160	1926
II32_MH63RS3_DEL0419540	Chr04	13887249	13889208	29407706	29409656	1951

>II32_TM_DEL0424880
CAAGGTCCAAGTGTACTGCTTCGAGGTCCTTTTATTCAATCAGTGCTTTTCGAGTTTTATGATTTATTCATGACAATACCAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGGTAAACCAAATTCTTTTTCCTACTTATTCATGTCCTTTCTTCTTTGTTTCGAACTAAAATGGTGCTTACAAACCAAAAACACGGGAAATATTATTGTAGATGATGATGAAGTTGCTAAGATATATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTGATTATTTTCATATAAATAATTAATAAGTCCAAATGTACAGAATGTTAGGTACTGCTAGTCAGATGATGTGCATGTCAAACTTCCAATTTCAGGTCAATATGGACCTCGCACCTTTCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTATAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGTATGGTTCACAAATCTGACTGCCCTGTATTTGCATTTGTTTATACATAAATGTCCTGAGTCTAAATGTCTTGTTTATAATTTTTAGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAGTGTAATGGATGAAGAACTTTGATGTGCCCCCTCATAATGTAGTAGTATGCCCCCTCCTAGTGTAGTATCTGCACCTTATGTAATGGATACCATGCAGCAGCTTTTGTTCAACTTTAATGGAGGCCATGCAGCAGCTTATGTTCTAAGTTAAGACTGTTATTCTGATGTAATATATTTATCATCTATTTCCCTAAAATTACCTAGTTGTTTGCATCACTTCAAATCTGATATGGCAAGTGTACAGTTTTTATGCTACTGGAGTTGCTGATTGTTGTTGGAATCACTGCTACAAAATTAAAATGGCTGCCCGTTCTGTTCTGAAAACTAAAAACATGCTACGGAAGCTTCATCTTGATTGTTGCTGGAATACTATACTTAATTGGGCTGAAAACACACAGAACAGAAGCAGCTGGCATGAATACAAATGAGTTTAAGAAACTTTAGTTGGCTGGAATACAAATGTAAGGTGCACACACAAGAGCGTCGGACGATGCAGGAACAACAGAGACCACAACAGCAGGAAGCGACGCCCGAGTATTCCGGCTGGATGCGACGGTGGATGCGGCAGGGTGGAGGCGGCGATTTTGATGCGCCTGGCGTCGTCGTGGATGAGTCGATGCGCCTGCGGATGGCTGGATGAGACAACGAGTTCTTGCGACGGCGGGATGGATGCGCCGGGGTGGAGGCTGCCGCTGTATGCGACGACGGGATGCGCCGCTATTGACGACGGGATGCGGGTTGGACGTCTGCCGCGGCGTCCTCGACGGCGGCAGACGCGTGTTCGACGCGCGGCCGCGGTGGCGTCGAGGGTACGTCGGCCGCGGGGGAATACCTGCGATGAGACGGCGGCTGCGGCGGACAAGATGAGACGCCGGCAACAGATATTGGCGCTTGGCGGCCGCCGCAGACTATTGGCTGGGATGGGCGGTGATTAACGCTACCCTAATTTTGTTTAGCCCCATCATACCCTTCCTAAATCAACGGTCAGATTACATTGATACCTTATGGTACCTCGTATCTCATGGTACACCTCAAGAATAGGAAATATGCTCTCTGAA