Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: II32_Nipponbare_DEL1125990

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1A: II32 | II32

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr11

14149335

14149888

SV Length:

Query Start:

Query End:

Allele sv Count:

576 bp

12152601

12153176

8 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
II32_127518_DEL1120270	Chr11	14149335	14149636	13439554	13439855	302
II32_127652_DEL1125700	Chr11	14149335	14149636	12337654	12337955	302
II32_G630_DEL1120820	Chr11	14149335	14353919	13457988	13785249	327262
II32_Kosh_DEL1125310	Chr11	14149335	14149623	11785126	11785414	289
II32_LJ_DEL1126460	Chr11	14149335	14149623	11890388	11890676	289
II32_Nipponbare_DEL1125990	Chr11	14149335	14149888	12152601	12153176	576
II32_Y58S_DEL1125840	Chr11	14149335	14150240	14221356	14223146	1791
II32_OglaRS2_DEL1134020	Chr11	14149335	14149635	11621543	11621846	304

>II32_Nipponbare_DEL1125990
CATTTGCCTGATTCCGAGTCCGTATGAGAAAGTTACGCCTATTTTAAGAAATGACACCCGAATGACGCCAAAGCATGTCGGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCATCCCTCCTTTTTGTCTCTCTCTCCCCCCTTTTGACTCGCGCCGCTGCGTCCATCGTGTTGTGTCGCCCCTTGGGCGGCGAAGCTGGGGAGAATCGGATGTAACATTTTCTGTAGATGTCCGTGGATATATCATTTGCCTGATTCCGAGTCCGTATGAGAAAGTTACGCCTATTTTAAGAAATGACACCCGAATGACGCCAAAGCATGTCGGATGCGATCATACCAGCACTAAAGCACCGGATCCCATCAGAACTCCGAAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCCTCGTGTTGCATCCCTCCTTTTTGTCTCTCTCTCCCCCCTTTTGACTCGCGCCGCTGCGTCCATCGTGT