Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: II32_IR64_DEL0426010

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

13882792

13883191

SV Length:

Query Start:

Query End:

Allele sv Count:

400 bp

27263808

27264207

39

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
II32_02428_DEL0437670	Chr04	13882792	13883191	28068477	28068876	400
II32_117425_DEL0426860	Chr04	13882792	13883191	26487702	26488101	400
II32_125619_DEL0415330	Chr04	13882792	13883191	28674152	28674551	400
II32_125827_DEL0421140	Chr04	13882792	13883191	29653418	29653817	400
II32_127518_DEL0414120	Chr04	13882792	13883191	28876461	28876860	400
II32_127564_DEL0430060	Chr04	13882792	13883191	29152580	29152979	400
II32_127742_DEL0410880	Chr04	13882792	13883191	28906285	28906684	400
II32_128077_DEL0432180	Chr04	13882792	13883191	26347621	26348020	400
II32_132278_DEL0437440	Chr04	13882792	13883191	27552536	27552935	400
II32_Azucena_DEL0434960	Chr04	13882792	13883191	26269930	26270329	400
II32_Basmati1_DEL0433930	Chr04	13882792	13883191	26037459	26037858	400
II32_CN1_DEL0426530	Chr04	13882792	13883191	28303555	28303954	400
II32_D62_DEL0416660	Chr04	13882792	13883191	28336112	28336511	400
II32_DHX2_DEL0436510	Chr04	13882792	13883191	26940689	26941088	400
II32_G630_DEL0412490	Chr04	13882792	13883191	28918030	28918429	400
II32_G8_DEL0404370	Chr04	13882792	13883191	28615502	28615901	400
II32_HZ_DEL0411020	Chr04	13882792	13883191	29077952	29078351	400
II32_IR64_DEL0426010	Chr04	13882792	13883191	27263808	27264207	400
II32_J4155_DEL0433100	Chr04	13882792	13883191	27216938	27217337	400
II32_J4155S_DEL0434870	Chr04	13882792	13883191	27784843	27785242	400
II32_Kosh_DEL0437930	Chr04	13882792	13883191	27737222	27737621	400
II32_KY131_DEL0436380	Chr04	13882792	13883191	28165798	28166197	400
II32_Lemont_DEL0435370	Chr04	13882792	13883191	27069959	27070358	400
II32_LJ_DEL0436910	Chr04	13882792	13883191	27068470	27068869	400
II32_NamRoo_DEL0438500	Chr04	13882792	13883191	28024669	28025068	400
II32_Nipponbare_DEL0436740	Chr04	13882792	13883191	27679732	27680131	400
II32_R498_DEL0418260	Chr04	13882792	13883191	27798469	27798868	400
II32_R527_DEL0417950	Chr04	13882792	13883191	28379130	28379529	400
II32_R9311_DEL0413920	Chr04	13882792	13883191	28987040	28987437	398
II32_S548_DEL0418590	Chr04	13882792	13883191	27860187	27860586	400
II32_TM_DEL0424860	Chr04	13882792	13883191	27024824	27025223	400
II32_Tumba_DEL0428610	Chr04	13882792	13883191	29345900	29346299	400
II32_WSSM_DEL0411510	Chr04	13882792	13883191	28467208	28467607	400
II32_Y3551_DEL0419450	Chr04	13882792	13883191	29139593	29139992	400
II32_Y58S_DEL0419430	Chr04	13882792	13883191	28875648	28876047	400
II32_YX1_DEL0416730	Chr04	13882792	13883191	27361865	27362264	400
II32_ZH11_DEL0437680	Chr04	13882792	13883191	27226595	27226994	400
II32_OglaRS2_DEL0443440	Chr04	13882792	13883375	24354508	24355091	584
II32_MH63RS3_DEL0419520	Chr04	13882792	13883191	29399278	29399677	400

>II32_IR64_DEL0426010
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCATGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTATTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTGGGCAGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCTAGATCGGGGATGGGTGGAGGTCATTAGCGCCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGCGGCGGCGATTCATCGGCGACGGT