Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: II32_FH838_DEL1229680

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

18096354

18097342

SV Length:

Query Start:

Query End:

Allele sv Count:

990 bp

5548416

5549405

13 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
II32_127742_DEL1201670	Chr12	18096354	18097342	11855313	11856303	991
II32_CN1_DEL1231070	Chr12	18096354	18097342	5531435	5532409	975
II32_D62_DEL1221310	Chr12	18096354	18096854	20798012	20798513	502
II32_FH838_DEL1229680	Chr12	18096354	18097342	5548416	5549405	990
II32_FS32_DEL1224560	Chr12	18096354	18097325	18439745	18440726	982
II32_G630_DEL1228070	Chr12	18096354	18096854	20906112	20906613	502
II32_IR64_DEL1216990	Chr12	18096354	18097339	7644795	7645779	985
II32_R527_DEL1218170	Chr12	18096354	18096854	20246005	20246506	502
II32_R9311_DEL1204560	Chr12	18096354	18097342	11943381	11944371	991
II32_S548_DEL1218870	Chr12	18096354	18096854	20587707	20588208	502
II32_Y3551_DEL1229490	Chr12	18096354	18097342	5548739	5549728	990
II32_OglaRS2_DEL1246830	Chr12	18096354	18097342	6950696	6951685	990
II32_MH63RS3_DEL1229740	Chr12	18096354	18097342	5551981	5552970	990

>II32_FH838_DEL1229680
GCTTTACGGAATAAATTGTTGTCTACCGTCATTATTGCTTTCCTTCCGAGAGTCCCCTTTCCCCGTAGTCTCCCTTCATGGCGTGATTCAGGTACCCTGATTGGGCGAAGGTCTTCAATAAATTCTATGCAGAATTCAATGACCTCCTCTGTTCCATACCCCTTGGCGATGCTTGCCTCTGGACGAGCACGGTTACGAACATACTTCTTCAGAACGCCCATGTACCTCTCGAAAGGAAACATGTTGTGTAGAAACACAGGCCCGAGAATACCGATCTCTTTCACTAGGTGACAAAGCAGATGCGTCATTATATTGAAAAATGAAGGTGGAAATATCAACTCAAAGCTGACAAGACATTGCACCACATCATTCTGAAGAGCTTCTAACCTATCCAGATCGATGATCTTCTGCGAAATTGCGTTCATGAAAGAACATAGCTTTGTTATTGTTGCCCGGACATTGTCTGGGAGGATACCCCTTATTATAACTGGTAGCAGTTGTGTCATCAACACGTGACAGTCATGAGACTTTAGGTTTGTGAACTTCTTCTCCTTCGTGCTTATTATTCGCTTTATATTCGTGGAGTATCCAGATGGTACCTTGATGCTCTCCAAGCATTGAAACATACTTTCCTCCTCTCCCTTGCTAAGAGTGTAACTGGCTGGACTCAAGTAATGGATGCCTTTCTCCTTTGGTTCCGGGTGAAGGTCACCACGTTGTTCCATATGCTTCAGATCATTACGTGCTTCCAGTGTATCTTTCGACTTTCCATATACACCTAGGAAGCCAAGAAGGTTTACGCAAAGGTTCTTAGTGAGGTGCATTACGTCGATTGCGTGGTGGACGTCCAAGAATTCCCAATAGGGTAACTTCCAAAATATGGAGTTTTTTTTCCACATCGCCGCGTGACCATCTTCGCTCTCTATAGGCTGGCTGCCAGGCCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACATTGTT