Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: HZ_R527_TRA0422350

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

TRA

Chr04

21179542

21183463

SV Length:

Query Start:

Query End:

Allele sv Count:

3948 bp

30902663

30906610

18 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
HZ_02428_TRA0446880	Chr04	21179542	21182399	32968833	32971699	2867
HZ_125619_TRA0425880	Chr04	21179542	21183463	31110971	31114916	3946
HZ_127652_TRA0437490	Chr04	21179542	21183463	29806671	29810572	3902
HZ_127742_TRA0400900	Chr04	21179542	21183463	31413310	31417262	3953
HZ_128077_TRA0439720	Chr04	21179542	21181361	26350236	26352055	1820
HZ_Azucena_TRA0443690	Chr04	21179542	21181361	26272545	26274364	1820
HZ_Basmati1_TRA0440570	Chr04	21179542	21181361	26040073	26041892	1820
HZ_IR64_TRA0436240	Chr04	21179542	21183072	31550870	31554412	3543
HZ_J4155_TRA0441740	Chr04	21179542	21183072	31383387	31386931	3545
HZ_J4155S_TRA0443070	Chr04	21179542	21183072	31958691	31962237	3547
HZ_Kosh_TRA0446570	Chr04	21179542	21181361	27739837	27741656	1820
HZ_Nipponbare_TRA0443160	Chr04	21179542	21181361	27682347	27684166	1820
HZ_R498_TRA0422930	Chr04	21179542	21183463	30321810	30325753	3944
HZ_R527_TRA0422350	Chr04	21179542	21183463	30902663	30906610	3948
HZ_R9311_TRA0408790	Chr04	21179542	21183463	31479368	31483314	3947
HZ_Y58S_TRA0416030	Chr04	21179542	21183072	33184755	33188298	3544
HZ_YX1_TRA0419420	Chr04	21179542	21183463	29855494	29859439	3946
HZ_ZH11_TRA0445640	Chr04	21179542	21181361	27229210	27231029	1820

>HZ_R527_TRA0422350
TGTAGCGCCCGTTCCGTCGTGGCGCCTAGCGGGAAAATTATCTCTTAAAAACCCTAATTGCGAAATTTGTTTCCTTGCTTGTTGTCTAGTGTCCGTGCCATCTCAAGATCTCAATCCCCGATCTATCGTCGAGTTCAATTCCGAATCCAATCCTTCCAAATCAAATCCCTCCGCAAAAGTCTAGTTTGCCTCCCCCGGGTTCGATGGGTCGAATCCCGCTCGGCCCATCTCTTCCCCGGCCCCCTCTCTCCCGGGCGCCCTCGCCCTCTCTCTCTCTCTCCCTCTCTCTCTCTCGCTCTCTTCCCCGGCGCGCTCCGTTTCTTCCCCCCCCCCCCCCCCCCGCTCAGCCCCGCTCCGCCTCGCCCGCGCGCCGCGCGCGCGAGCGCGTGAGCCGCGCCGCTCGCGCCGAGCCGAGTCCTCCCTCTCCGCTCCCTCGCAGCCGCTCCCCGCGCGTTGTTCGCGCGCGCGCCCGAGTGGTCCTCGCCCGCGTCGCGTCTGCGCCGCCCGGCCCCGCTGCCCTGCCGCGCCTGCAGCCGCTCGGCCCCGCAGCCAGCGCGCGTGCCGAGTCGCGCCGTTGCTCTGCCGCGCCTCCCGTTGCAAGCCGCGCGCGCGTGCCGTGGTGGCCGACCGCCTGGTCGCCGTCGTCGTCAGCGTCTGCCGCGTCTGTCGCCCGTGTCGTCGCGCCGCTCCAAACCGCCCGCCGTCGTCACCGCCCGGCCCCCGCCACTCCGCGCGCAAGCCGCCAATGGACGGAGGCAGCGCCCCTCCTCTCTCTGCCGCGTCGCCCCGCTCCCCTCCTCCTTTTTCCCGAATCGGCAAAGGGGCAAGCCCCCTTTCTCCCCCTCCTTTTCCCCTTTTTCCTTCTCGCCGGCGTCATCCTCCTGCCGCCAATTTGGCCGCTAGCCGGAGCGCCAGCTCGCGCCTTGACCGTCCAATGTCGGTTCCCCTCTCCCAAACCGACAATTGCCGCCCATTTAAACCCAGCCTCCCCCCCTTTCCCTTCCTCTCCCATTCGCCCCCCGTGCCATTGCTGTCGCCCCTGTTCGCCGTCGCCGTTCGTCGTCGCGTGTGTGCCGGAGGAGCCGGTGCACACTAGGACGCGGAAGGGGACTTCGGGCGCGCCCTCTTCTTCTTCTTCCCCGGCCCGAGGCCGGAGAGATTACTCCCGCGCCGTCGGCCTCTCGTCACAGCGCCCCGTCCCGCATGGTAGTGCCTCCCTCCGTTCTTCCTCCTCGCTCCATCTTCCCCCCCTTAGATTTCGGTAGTAGCTCGAGTAGCCTCCCCGTAGTTAGCCGGCGCCGCCCCGACCGTTGCCGTCGCTCGCCGTGTGCTCGCCGCCGTCGCCGCTCGAGCTCCGTAGCACTCGCACGTCGCCAGCCTCGCTCGGCGTAGCTCCGTCCAATCCGACGCTAGCGTCGAGTTCCCGAAGCCGCGTAGATGCTCTCACCGCCGGGAATCGACCCCCCCGTGGCCTCGTCGCCGTTTCCCTCTTCCCTCCCCGCCGGTTGTCGCCGCCGCGATTCGCCGCCGTCAAGCTCCCTCCGGCGAATCCGAGCCGTTGGCTCGTCTCCCCTCGTCACGTGCAACCGCCCGGTGTGCTCGCTTTTGCCCGTATCGCCGTGGTTCGCTCCGTCGCTCGCCGCCGCCGCCCACCGTCCATTCGCGGCCGGGTCGTCGTCTACCTCCCGCCAGCCCACGTGGCAGCCACGTAGGCGCCATGTCGGCGCGAGCTCAGCCGAGGTCGGGATGGGCCGACCCCGGTCAGTCCCTCCCCGTGCGCGCGTTCCACCGCGAGCCGTGAGGCTGCGCGTGGGCTCGCCGCATCCGCGCCCACCGCGAGCCGCGCGCGTGCACCGCGTCCCTCCCCCGCCCGCGCGCATGAGCCGCGTACTCCCTCCGCACGGTGAGCCGAGCCGCTGACAAGCGGGTCCCATCCGGGACCGCGCGTGGTGAGCTCGATCCACCGGACTCTCTCTCCTTCCTCCGCGCGCGCGCGTCTTGGGCCGCTCTGGGCCACCTTCTTGGGCCGGCCGGCCCGTTAAGATCGGCCGGTCCGCCCCATTTCCCTTGGGCCGCGCCTTAGCCGCCCGAGGAAAAGTCTATAATCCCTCCCTCTGTCCTTTTCAATTCTTTTCTTTTCCAAAAGGATTTAATTAAATCCTTTTCCTTTAGACCAAAAATCCAATAATCTTAGAAATTCAATATCTTCCCAACCGTAAATCCGTTTGACTCCGTTCAACTTCCAAAATTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTAATAGGGCTTTATTTTCGCCGTTTGTTGAGTTGTCCCGTTTCGCGTGTAGTTCCGGAGCCCGAAGACCCGCAGTGCGAGGATTTCGAGGATCAAGCTCCAGATCTCGAGCAAGGCAAGCCACCCTTGAACATCTTGAGCCTATATTTGAAATTTAATTATATTGCTTGCAAAATATTATGCATTGATAGGATCGCACTTAATCTTTTGTCCCGTCTGCAAGGCAGATTGGCGGACTTACCTAATTTGTCACATTTGATCCTTCCTTTGTTAATTGCTATATCTTGTCCCCTTGTAACCATCTAGTTGCGTCTCGATATTCGTGCACCCTGTGCGAGTATCGACGGACGCCTTCAAACTTAAAATCTGTTTAACAACTTGGGTAAAACTTGGGTTTTACAAAAGACTTGGAAAACCCGACACCTGGGTCGGTGCTTGTGAACTAAATGAATTTCCAAAACCGCGGACCGGGGAACGTACCGGGTGTACGGTTTTCCGCTCTCGCACTTAAGGACCGATTCCTTGGAATTTCATCCAAACATAAGACAAGTACGACCACATGGGTGGAATGGGACACCCCTGGCTGAGTAACTAGCTTATCAGGGGAGCCATGATGCCGAGAGACATGTGGATTCGCTGAGGTGGTGTCGAAGAGGACCCCCCTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTAGGACCCCTCTCGTCGGCATATGGTAAACCTGTGTCGGCTTTTGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGTGGCTGATCCCCACGGGCTGGGTGATCCGGGCTAGTAATGTCGTGTGGGTAAAGTGTACCCCCTCTGCAGAGGTTAACAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTCCTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTGTTACGGAAAAGGGGTTCGATGTTTGAAAAATCTGCAGCTGATGGGATCAGCTAGGCCCGGGTGGCCGTTTGTAAAGTCGTTGGCCCGGGTGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAATCTTGTTTCAATTCTAAAGACTGATACATTGCACATACTCCGACCGGACGAGACGCACTGTCTCATCCGCGTCGTTTGAGAAGCACTCACTTAGTTGTTTTTAGAAAAGAGTTCAAATAAAATCAATTGCAAAAACATCAGCCTTTCCTTGAAGCCTGCATTAAACACTTATTTCCCCTGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATAAATAATCCCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAGGAGTTCTTCCAGGAGCAAGCCGGCTACGATGAGTTTTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGTTGTTTGGTCCAAGTCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCTGCAGCCCAACATGACTGTACTCCTACTCTATAATAAAGAGATCTTTGTTGCTGTGATATTCTGTCTCCCTGTGATACCAGCACTGTTTCCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAGTTCCGATCAGGACTAGTTCGGGGCGTGACA