Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: G46_YX1_DEL1116650

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr11

12859296

12863696

SV Length:

Query Start:

Query End:

Allele sv Count:

4404 bp

12793870

12798273

23 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
G46_117425_DEL1123130	Chr11	12859296	12863696	11582906	11587295	4390
G46_117534_DEL1115270	Chr11	12859296	12860413	11711725	11712840	1116
G46_117534_DEL1115270_1	Chr11	12859296	12863696	12618846	12623250	4405
G46_127742_DEL1118030	Chr11	12859296	12860071	13617552	13618326	775
G46_127742_DEL1118030_1	Chr11	12859296	12863696	13271141	13275545	4405
G46_Azucena_DEL1125400	Chr11	12859296	12862514	12362893	12366098	3206
G46_Basmati1_DEL1124150	Chr11	12859296	12863696	12267441	12271835	4395
G46_D62_DEL1110440	Chr11	12859296	12862514	12339374	12342577	3204
G46_D62_DEL1110440_1	Chr11	12859296	12863696	12174892	12179281	4390
G46_G630_DEL1118580	Chr11	12859296	12863696	13529537	13533940	4404
G46_Kosh_DEL1121840	Chr11	12859296	12863696	11756308	11760700	4393
G46_Lemont_DEL1125080	Chr11	12859296	12863696	12038303	12042693	4391
G46_NamRoo_DEL1124840	Chr11	12859296	12860434	10261653	10262793	1141
G46_NamRoo_DEL1124840_1	Chr11	12859296	12863696	11705071	11709468	4398
G46_Nipponbare_DEL1122030	Chr11	12859296	12863696	12068959	12073352	4394
G46_R498_DEL1115950	Chr11	12859296	12863696	13022699	13027103	4405
G46_R527_DEL1117340	Chr11	12859296	12863696	13317937	13322341	4405
G46_R9311_DEL1119220	Chr11	12859296	12860071	13579041	13579815	775
G46_R9311_DEL1119220_1	Chr11	12859296	12863697	13627624	13632033	4410
G46_S548_DEL1115780	Chr11	12859296	12863696	13223912	13228316	4405
G46_Tumba_DEL1115950	Chr11	12859296	12863696	13055090	13059491	4402
G46_YX1_DEL1116650	Chr11	12859296	12863696	12793870	12798273	4404
G46_MH63RS3_DEL1118780	Chr11	12859296	12863696	13302702	13307106	4405

>G46_YX1_DEL1116650
TGATGAACCCTGAGTTCCTCCCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACAATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGCAATCTGATATTGCAAATAGGAATTTAATACGAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGTGACGCAACACCTTGCTTCTGTGATTGCGGCCAAACAAGATAGAATTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCGCAAAACGGAGCACGTATGTAGATTTTGCGACCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAAGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCATCCTCCCCTTCTTCACAGAAAACCGTCCTCGGTTTTTCCATATGGTGCTCTTCGCGCAGTCCGCTGAAAACAACCTGTTTCTTGCAATCAAAACAAGACAAACTCGAGACAATATGATTAGCAGTAACATGTCTCTCTAGCTTGCATATTTTATCCGGAACTACAAGATGTTCTAAATCTGAACAAATGTAAACTCTATGCACCAAAAATATTCCTCTATCATTATATTCGCCAAAGATATGAAAAATAGCATTAGTTGGACATGGCAAATCAGATTTATCAAATAATTTCTCCTTCAAATTATCGAGCTCACAAAAATCATCAAACTGAACATAGCCCAAAGTATTTAAAGAAGATAGCAATTCGCGTTCCTCTACTTCATTAGTAATGTGAACAACATGCTTAGAATCAGCACACAAAGAAATAGTAGAACTAACATGTTCATTCACTAGTTGTGGCATGGATATAAGTGAAACATTATCACACAACTCTTCTTTATCACAAGGAACAGCAAGTAAATCAACTTGTGACAAAGGCAACTCAGCAATTGATTCCACTAATGGTTGCTCTACTATAGCATGAAAAGTGGACAAGTGTAGCTCACCTTGAGAATACTCACCTTCATTTCTCTCAGCACCATTTAATTTACCTTGCGAACTTTCTTCAGATAATGTAGCTGCATCAGCCTTCTCCTCATTCGCGAGTGATGGAAGTGACATCTCAAACATATCGTTCTTCTCATTTTGGAGACTTTTCTGAACTTCCTGCAAAACATCAGTGATAGGAGGCACAAGCATATCTTGTTGCTCCGTTGGATTCTCCAAAGTTTTGCGCTCAACAATGCAAGCAAGCATGAACAATTGGCCTATATGATTATATGTCACATTAACAAGCCCAGCCTGAATATTGAAATTAAGCCCTCTGAAAAATCTAGTCATTGTGTTCTCATTCGATTCTTGTAAACCACTATAAGTGATACAAATTTTAAAATCATGAAAGTACTCCCTAACAGTTTTGTCACCTTGTTTTAGATGTTCCCATTTCTCAAGGAGAGCACGTCTATAGTATGAAAACACAAATCTTTTTCTCATCAGTATTTTGCATTCATCCCAAGTTTCAAGCTTATTCCCCACAGTATGCCACCAAAAAGATGCAGAACCGGTACACTTATTACTAGCAGCCTTAATCATTTGAGCATTAGAAAAATCATACTCATCAAATTGTTTTTCTACTGCTAGCTCCCAATTAATGTATGCAGCGGAATCATACTTTCCATCATAGACTGGTAACTTACATGCAACTTGTGCAAAATTATAGTCATGTACCTCATATGCATCACGTGAAGAAGTCGTCATATCTCGTCGAAGGTGTAGATGTTGACGTTGAGCATGACCATCTTGTTTCCCCTTGCGCAATCCTGCCATGGTTAGCAGCAAACAAGAAACATACACAAGAATATACACGCTCCTATCAACTACTAGGTAGTGGCAGCTCAAATCTCACACACACTCAAGCTTTTAACCAAGCTCTTACAAGATCTTACCAATGCAAGTGGAATGGTGATGTACACCGACTCAACCAAGCACCCCAATGGAGGTTGGATGTATCGATGCCTTGGCAAACACTTGCTGTACGGCTGCAATCAGATCTGTGGAGCTCTGGGTAGGCTTAAATATGTAGCAAAGGAATAGCAAATGCTCAAATCAGAGAACGCAAAGTTGAATAATTGTTCAAAGTCAAGTACCGTGCTGGTCCTAGGCTAGAACGTACTAGAGACGCGAGCCTAGACACAAACGGTACCACAAAATAGCACCAGAAACAACTCAAGCACACTCTGATGTATGAAAGCAAACTCAAAGATACAACTAATTTTTCCTTTTGCTTCTTTCTTTCCTTTTCTTTCTTTTCTATTTTCTTTTCTTTTTCTTTTCTCTTTTTTTTTCTTGGTGCGGCTTTTCTTCTCTTTTTTTTATGCACCTTTCTGCCTTTTTTTTCTTTCTTTTTTTTATTTTTTTTACCAAAAACTGACTCAAGGACCTTAATGTAAGGTTACAGGGACTCAAACGTAAATATAAAATTTACAGGGACTCAAATGTAAAAGTCTAAACCCAAAATTAAAATTATACAAAAAAAATGGAATGCTGAATATATGCTGATTCCGTTTTTCCAAACAGATCTCGAAACCGACACCAAACAAAAATTCGCCAAGGTGTTTGACACAACTCGGAACCGTGGAAGAGAGGGAGGGAGTCGGACTCGACCAAAGGGGCGAGTGGGACTCGGCCAGGAGGTGGAGTGGATGGCAGCCGAATTTGGTGTATGGGATAAAAAGGAAACTGAATTTTAACCAATCCAATCTACTATATCTTTCCAAAACAAACTTGACTACTTCCAAAATCAGATATGGTAATTCACCTTCCTCCTCTCGTGCACGACACAGGCACGGCCAAAAAAAACACACACAAGGATCGGCAAACTCTAGATGCAACTCAAGAACTCCAAAACTAACCGACAGAAACTTCTGAAAACTACAAAAATAGAACCGTGGCAGCGAGCCAATTCCGTTTTTGTAGGTCCCGACAACAACAGAGACACGGTGGCAGCGACGACTGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAGCTAGACGCTAAGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAATATGGCTAGGTAAATGATACGAATTTTTTTGTATGGCTATTTTCTGGTTATAGGAAGATAAAAACTCACCGAGCAACGAAAGCTCTGATACCACCTGATGAACCCTGAGTTCCTCCCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACAATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGCAATCTGATATTGCAAATAGGAATTTAATACGAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGTGACGCAGCACCTTGCTTCTGTGATTGCGGCCAAACAAGATAGAATTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCGCAAAACGGAGCACGTATGTAGATTTTGCGACCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAAGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGC