Variation ID: G46_Azucena_DEL0434990

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os XI-1A: G46 | G46
Os GJ-trop1: Azucena | AzucenaRS1
Chr04
13560299
13562206
SV Length:
Query Start:
Query End:
Allele sv Count:
1901 bp
26276915
26278815
39
Gene_id Chromosome Start End
OsAzu_04g0022310 Chr04 26276660 26277807
SV_id Chromosome ref_start ref_end query_start query_end length
G46_02428_DEL0436030 Chr04 13560299 13562206 28075461 28077361 1901
G46_117425_DEL0429840 Chr04 13560299 13562206 26494687 26496587 1901
G46_125619_DEL0423110 Chr04 13560299 13562206 28681137 28683037 1901
G46_125827_DEL0421870 Chr04 13560299 13562258 29661846 29663796 1951
G46_127518_DEL0423560 Chr04 13560299 13562258 28884887 28886837 1951
G46_127564_DEL0419700 Chr04 13560299 13562258 29161011 29162961 1951
G46_127742_DEL0424440 Chr04 13560299 13562258 28914733 28916670 1938
G46_128077_DEL0432450 Chr04 13560299 13562206 26354606 26356506 1901
G46_132278_DEL0436170 Chr04 13560299 13562206 27559521 27561421 1901
G46_Azucena_DEL0434990 Chr04 13560299 13562206 26276915 26278815 1901
G46_Basmati1_DEL0434030 Chr04 13560299 13562206 26044443 26046343 1901
G46_CN1_DEL0411410 Chr04 13560299 13562258 28311983 28313933 1951
G46_D62_DEL0417300 Chr04 13560299 13562258 28344540 28346490 1951
G46_DHX2_DEL0437540 Chr04 13560299 13562206 26947672 26949572 1901
G46_G630_DEL0417780 Chr04 13560299 13562258 28926458 28928408 1951
G46_G8_DEL0421230 Chr04 13560299 13562258 28623945 28625882 1938
G46_HZ_DEL0424350 Chr04 13560299 13562258 29086400 29088337 1938
G46_IR64_DEL0420510 Chr04 13560299 13562258 27272258 27274195 1938
G46_J4155_DEL0432960 Chr04 13560299 13562206 27223923 27225823 1901
G46_J4155S_DEL0434600 Chr04 13560299 13562206 27791828 27793728 1901
G46_Kosh_DEL0437520 Chr04 13560299 13562206 27744207 27746107 1901
G46_KY131_DEL0437910 Chr04 13560299 13562206 28172783 28174683 1901
G46_Lemont_DEL0435080 Chr04 13560299 13562206 27076944 27078844 1901
G46_LJ_DEL0437180 Chr04 13560299 13562206 27075455 27077355 1901
G46_NamRoo_DEL0436570 Chr04 13560299 13562206 28031648 28033548 1901
G46_Nipponbare_DEL0437110 Chr04 13560299 13562206 27686717 27688617 1901
G46_R498_DEL0424570 Chr04 13560299 13562258 27806917 27808854 1938
G46_R527_DEL0425900 Chr04 13560299 13562258 28387578 28389515 1938
G46_R9311_DEL0424420 Chr04 13560299 13562258 28995439 28997376 1938
G46_S548_DEL0426040 Chr04 13560299 13562258 27868635 27870572 1938
G46_TM_DEL0416680 Chr04 13560299 13562258 27033252 27035202 1951
G46_Tumba_DEL0419250 Chr04 13560299 13562258 29354326 29356276 1951
G46_WSSM_DEL0424820 Chr04 13560299 13562258 28475655 28477592 1938
G46_Y3551_DEL0426910 Chr04 13560299 13562258 29148022 29149972 1951
G46_Y58S_DEL0424650 Chr04 13560299 13562206 28882633 28884533 1901
G46_YX1_DEL0425040 Chr04 13560299 13562258 27370313 27372250 1938
G46_ZH11_DEL0437240 Chr04 13560299 13562206 27233580 27235480 1901
G46_OglaRS2_DEL0441280 Chr04 13560299 13562258 24355235 24357160 1926
G46_MH63RS3_DEL0427140 Chr04 13560299 13562258 29407706 29409656 1951

>G46_Azucena_DEL0434990
CAAGGTCCAAGTGTACTGCTTCGAGGTCCTTTTATTCAATCAGTGCTTTTCGAGTTTTATGATTTATTCATGACAATACCAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGGTAAACCAAATTCTTTTTCCTACTTATTCATGTCCTTTCTTCTTTGTTTCGAACTAAAATGGTGCTTACAAACCAAAAACACGGGAAATATTATTGTAGATGATGATGAAGTTGCTAAGATATATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTGATTATTTTCATATAAATAATTAATAAGTCCAAATGTACAGAATGTTAGGTACTGCTAGTCAGATGATGTGCTTGTCAAACTTCCAATTTCAGGTCAATATGGACCTCGCACCTTCCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTGTAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGTATGGTTCACAAATCTGACTGCCCTGTATTTGCATTTGTTTATACATAAATGTCCTGAGTCTAAATGTCTTGTTTATATTTTTTAGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAGTGTAATGGATGAAGAACTTTGATGTGCCCCCTCATAATGTAGTAGTATGCCCCCTCCTAGTGTAGTATCTGCACCTTATGTAATGGATACTATGCAGCAGCTTTTGTTCAACTTTAATGGAGGCCATGCAGCAGCTTATGTTCTAAGTTAAGACAATGTTATTCTGATGTAATATATTTATCATCTATTTCCCTAAAATTACCTAGTTGTTTGCATCACTTCAAATCTGATATGGCAAGTGTACAGTTTTTATGCTACTGGAGTTGTTGATTGTTGTTGGAATCACTGCTACAAAATTAAAATGGCTGCCCGTTCTGTTCTGAAAACTAAAAACATGCTACGGAAGCTTCATCTTGATTGTTGCTGGAATACTATACTTAATTGGGCTGAAAACACACAGAACAGAAGCAGCTGGCATGAATACAAATGAGTTTAAGAAACTTTAGTTGGCTGGAATACAAATGTAAGGTGCACACACAAGAGCGTCGGACGATGCAGGAACAACAGAGACCACAACAGCAGGAAGCGACGCCCGAGTATTCCGGCTGGATGCGACGGTGGATGCGGCAGGGTGGAGGCGGCGATTTTGATGCGCCTGGCGTCGTCGTGGATGAGTCGATGCGCCTGCGGATGGCTGGATGAGACAACGAGTTCTTGCGACGGCGGGATGGATGCGCCGGGGTGGAGGCTGCCGCTGTATGCGACGACGGGATGCGCCGCTATTGACGACGGGATGCGGGTTGGACGTCTGCCGCGGCGTCCTCGACGGCGGCAGACGCGTGTTCGACGCGCGGCCGCGGTGGCGTCGAGGGTACGTCGGCCGCGGGGGAATACCTGCGATGAGACGGCGGCTGCGGCGGACAAGATGAGACGCCGGCAACAGATATTGGCGCTTGGCGGCCGCCGCAGACTATTGGCTGGGATGGGCGGTGATTAACGCTACCCTAATTTGTTTAGCCCCATCATACCCTTCCTAAATCAACGGTCAGATTACATTGGTACCTCATG

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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