Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FS32_IR64_DEL0421610

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

15094963

15097497

SV Length:

Query Start:

Query End:

Allele sv Count:

3109 bp

27264208

27267316

19

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FS32_125619_DEL0425230	Chr04	15094963	15095877	28679227	28680141	915
FS32_125827_DEL0423920	Chr04	15094963	15097497	29653818	29656926	3109
FS32_127652_DEL0431000	Chr04	15094963	15097497	27502175	27505270	3096
FS32_127742_DEL0425880	Chr04	15094963	15097497	28906685	28909793	3109
FS32_D62_DEL0421100	Chr04	15094963	15097497	28336512	28339618	3107
FS32_G8_DEL0422230	Chr04	15094963	15097497	28615902	28619007	3106
FS32_HZ_DEL0425440	Chr04	15094963	15097497	29078352	29081460	3109
FS32_II32_DEL0421160	Chr04	15094963	15097497	28835283	28838387	3105
FS32_IR64_DEL0421610	Chr04	15094963	15097497	27264208	27267316	3109
FS32_LK638S_DEL0411230	Chr04	15094963	15097497	28833545	28836653	3109
FS32_R498_DEL0425570	Chr04	15094963	15097497	27798869	27801977	3109
FS32_R9311_DEL0427020	Chr04	15094963	15097497	28987438	28990546	3109
FS32_S548_DEL0427090	Chr04	15094963	15097497	27860587	27863695	3109
FS32_TM_DEL0418380	Chr04	15094963	15097497	27025224	27028332	3109
FS32_WSSM_DEL0425890	Chr04	15094963	15097497	28467608	28470715	3108
FS32_XL628S_DEL0410120	Chr04	15094963	15097497	28960673	28963781	3109
FS32_YX1_DEL0426310	Chr04	15094963	15097497	27362265	27365373	3109
FS32_ZS97RS3_DEL0421180	Chr04	15094963	15097497	29174618	29177726	3109
FS32_MH63RS3_DEL0428920	Chr04	15094963	15097497	29399678	29402786	3109

>FS32_IR64_DEL0421610
TAGGGCTGTCAAAAAAGCTCGGAGCTCGCGAGCAGCTCGAGCTCGGCTCAAGTTCGACTCGGCAAGGATTCGAGCCGAGCTCGAGCTTGTCTCGAAGCTCGCGAGTTCTACCGAGACGAGCTCGAGCTATTCGGCAGAAGCTTGAAATTTTCACTCCCGCTACCCATCCCAATTTCTCCCGCACTCCAATTCCAAAATCCTACCACCAACAGCAGTCCATCACCTAACCATTTATTTCCCTTATATCCCCATCCCGTATCCAAACCCTAGCTCATTTGCTCTCTTCCTCGAAACATTTCTCTTCTAGATCTACAATCCTAGGCTGCTCTAGTGCTCCACTGACCACTGCTGTGGATCTAGCCAAGCACCGTCTATCCTTCGCCTCTCCTGTCCAGGAAGAACCCCATGGAGGACAGCAGCAGCCCACCGCCTCCGCCGTGAGTGACGAACCGACGACTCGGATCTGAGTAAGTTTCCTCTTCTTTCTTTGTTTCACATTTTTATTTCTTTTGCACCCACATGTATCTAGGGCCCTACATGTATTAACTGTGTAGTGTTTAGTTGCTTGATGGATGTTATTGATTTACATTGAATTTTATGGACTAGGTGGAGACATGGAGTAGTACTTATCTTGCTGTTCTCCTCTTCTGAAGAAAGACTGAAGGTTGCAGAACACCGTGTGTTTGCCATTTGCCAAGGTAAATTGATGGCAATGCTTTTCTTGTTGTACTTGTTTGATTCCTTCCCTTGTGCAGAATATATATTGATAGCAGTTGGTATTTTTATTTTTTGTAGATGTCTGTAAACCTGCAAAGACAGCTATCTGTAGAGATCGAGTCACCGAGCAATAGAGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCTATGAGTTGCCATTTTGCCTTGTGGAGTATACATGGTTTAATGTTTTGCTAAAGAGGCTAAACCCTTCTTACAAAAAGGTCTCTAGAAATACCATTAGAAGTGATTGTATGAGGCTTTATGAATCTGAAAAAGAAAAACTGAAGAGGACTTTCAAAGATGTTAGAAAGATAAGCCTCACATGTGATCTTTGGACCTCTAACCAAACAATTTGCTACATGAGCCTTGTTGCCCACTACATAGATGCTGATTGGTCAATGCATTGTCGTGTTATTAACTTTCTTGAGTTGGAGCCTCCACATACTGGTGTAGTTATTGCTAATGCCATTTCTGATTGTCTTGCTTCATGGAGAATTGAGGACAAGATAGCTAGCATCACATTTGACAATGCCTCAAGTAATGACAGTGCTGCTAACCTGTTGCTTGCCAAGTTTACAAAACGTGGTTCACTTTGGTTTTATGGAAAATTCCTTCATATCCGCTGTTGTGCTCACATTCTGAACTTAATTGTCCAAGATGGTCTGGCTGTGATTAAGCATATAATTGACAAAGTTAGGGACACTATCAAGTACATCAAGAAATCAAACAATCGAGCATACAAGTTCAGTGCTGATATTGATTCTCTCAACCTTAAAAGTGACATGGGTTTGGCTATTGATTCCTGCACAAGGTGGGGCTCAACCTTCAAAATGCTGCAATCTGCATTTTTTTATAGGTCTGCCTTGGATGTATATGCTGCAGGAGATGCAAACTATAGGTGGCTGCCAACACCAGAGGAATGGAATCTATATTGTGAAGTCAATGATGCCCTTTCTGTCATTCATGCAGCCACTGAGGAGTTCTCAGGTTCAACCTACCCAACATCTAACCTTTTTTATTCTCACATTGTCGATATTAAGAGAGTACTAGGTCAGTTGTTGAAGTCCAAAGACCCAATTCTTAAAGAAATGGCAAATGCAATGCTTGAAAATTTTGAGAAGTACTGGGGCCCAGAATGCAATACTTTGTTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACTGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCACATCAAAGGAAAATGATGCCACCACTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTCTGCTGCTAGCCAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTTGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTTGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCAAGTGATTAGTGATTATCGCAGCTCTTTACTCCCATCAACAGTACAAGCTTTGGTGTGTACATCTAGTTGGATTAGAGGAGGCCACCACAAAAGCACATATTTAGTAAGTTCTTATATTTTCATGTTTCTAACCAATTAATAGAGATACACAATCTAATAATCTATGTTTACTTGTTTGTTGCATACTAGGAGGATGATACTAATTCTATTATCCTTGTCCCAACTCAAGCTTCAACTGCAAATTCGGTTGTGGGCAGCAATTAGACTCGTTTGTCAGGTATATGTTTGAGGTTATATAAATTATCTATTGCTACCATATCAATTCCTCATCATTGATGAAACATTACCTATAATCT