Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FS32_IR64_DEL0419350

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

13540401

13540800

SV Length:

Query Start:

Query End:

Allele sv Count:

400 bp

27263808

27264207

38

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FS32_02428_DEL0434790	Chr04	13540401	13540800	28068477	28068876	400
FS32_117425_DEL0429560	Chr04	13540401	13540800	26487702	26488101	400
FS32_125619_DEL0422700	Chr04	13540401	13540800	28674152	28674551	400
FS32_125827_DEL0421660	Chr04	13540401	13540800	29653418	29653817	400
FS32_127518_DEL0422410	Chr04	13540401	13540800	28876461	28876860	400
FS32_127564_DEL0419520	Chr04	13540401	13540800	29152580	29152979	400
FS32_127742_DEL0423580	Chr04	13540401	13540800	28906285	28906684	400
FS32_128077_DEL0433400	Chr04	13540401	13540800	26347621	26348020	400
FS32_132278_DEL0434790	Chr04	13540401	13540800	27552536	27552935	400
FS32_Azucena_DEL0434580	Chr04	13540401	13540800	26269930	26270329	400
FS32_Basmati1_DEL0433690	Chr04	13540401	13540800	26037459	26037858	400
FS32_CN1_DEL0411610	Chr04	13540401	13540800	28303555	28303954	400
FS32_D62_DEL0418830	Chr04	13540401	13540800	28336112	28336511	400
FS32_DHX2_DEL0436410	Chr04	13540401	13540800	26940689	26941088	400
FS32_G630_DEL0417730	Chr04	13540401	13540800	28918030	28918429	400
FS32_G8_DEL0419950	Chr04	13540401	13540800	28615502	28615901	400
FS32_HZ_DEL0423200	Chr04	13540401	13540800	29077952	29078351	400
FS32_IR64_DEL0419350	Chr04	13540401	13540800	27263808	27264207	400
FS32_J4155_DEL0431930	Chr04	13540401	13540800	27216938	27217337	400
FS32_J4155S_DEL0433410	Chr04	13540401	13540800	27784843	27785242	400
FS32_Kosh_DEL0436660	Chr04	13540401	13540800	27737222	27737621	400
FS32_KY131_DEL0436250	Chr04	13540401	13540800	28165798	28166197	400
FS32_Lemont_DEL0434060	Chr04	13540401	13540800	27069959	27070358	400
FS32_LJ_DEL0435810	Chr04	13540401	13540800	27068470	27068869	400
FS32_NamRoo_DEL0435620	Chr04	13540401	13540800	28024669	28025068	400
FS32_Nipponbare_DEL0437330	Chr04	13540401	13540800	27679732	27680131	400
FS32_R498_DEL0423350	Chr04	13540401	13540800	27798469	27798868	400
FS32_R9311_DEL0424680	Chr04	13540401	13540800	28987040	28987437	398
FS32_S548_DEL0424630	Chr04	13540401	13540800	27860187	27860586	400
FS32_TM_DEL0415980	Chr04	13540401	13540800	27024824	27025223	400
FS32_Tumba_DEL0420200	Chr04	13540401	13540800	29345900	29346299	400
FS32_WSSM_DEL0423600	Chr04	13540401	13540800	28467208	28467607	400
FS32_Y3551_DEL0425930	Chr04	13540401	13540800	29139593	29139992	400
FS32_Y58S_DEL0424490	Chr04	13540401	13540800	28875648	28876047	400
FS32_YX1_DEL0423860	Chr04	13540401	13540800	27361865	27362264	400
FS32_ZH11_DEL0435990	Chr04	13540401	13540800	27226595	27226994	400
FS32_OglaRS2_DEL0439260	Chr04	13540401	13540984	24354508	24355091	584
FS32_MH63RS3_DEL0426400	Chr04	13540401	13540800	29399278	29399677	400

>FS32_IR64_DEL0419350
TTTTTACTGTCCTTGAGCAACTGCAGTACCAAATCATGACTGTTGATTCGAGATCATCCAACGGTCCAAAAGGCGTCGGTACCTCATGGTACCGCACCTCCCATTGACGCGGTACCGTGGTATGGAGGGTAGTTTTGTACTTTCGCGTTGTATACCGATTCACGGCTTCACGCACGCGGCATCTATTTCTTCGCTGTTTCGCGAGAGAGGAGGAAGCGCTGGGCAGAAGCGAGAGAAAGAACCCTAGATGGCGGCGGGAGGAGGGGCATGTAGCGAATCCTGGATCAGCGACTCGATGGCGGCTAGATCGGGGATGGGTGGAGGTCATTAGCGCCAGGCCCAAATCGGCCAACCGTCGGGAGCTCGAAGATGGTTGCGGCGGCGATTCATCGGCGACGGT