Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FH838_ZH11_DEL1129840

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr11

14185580

14186458

SV Length:

Query Start:

Query End:

Allele sv Count:

890 bp

12600683

12601572

19 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FH838_117534_DEL1123530	Chr11	14185580	14194346	12489136	12489136	8767
FH838_127518_DEL1117260	Chr11	14185580	14194346	14210589	14210589	8767
FH838_127742_DEL1117140	Chr11	14185580	14194346	13139345	13139345	8767
FH838_128077_DEL1129780	Chr11	14185580	14186458	12865163	12866052	890
FH838_DHX2_DEL1125780	Chr11	14185580	14186458	12347517	12348406	890
FH838_G630_DEL1119110	Chr11	14185580	14194346	13397748	13397748	8767
FH838_Kosh_DEL1124850	Chr11	14185580	14186458	11756210	11757099	890
FH838_KY131_DEL1127750	Chr11	14185580	14194346	12066990	12071394	4405
FH838_LJ_DEL1125530	Chr11	14185580	14194347	11856838	11864855	8018
FH838_NamRoo_DEL1129820	Chr11	14185580	14186360	16398857	16399648	792
FH838_Nipponbare_DEL1126190	Chr11	14185580	14194346	12791093	12795511	4419
FH838_R498_DEL1117160	Chr11	14185580	14194346	12891566	12891566	8767
FH838_R527_DEL1116270	Chr11	14185580	14194346	13186142	13186142	8767
FH838_R9311_DEL1120690	Chr11	14185580	14194346	13069999	13069999	8767
FH838_S548_DEL1117120	Chr11	14185580	14194346	13092120	13092120	8767
FH838_Tumba_DEL1118450	Chr11	14185580	14194346	12924439	12924439	8767
FH838_YX1_DEL1117690	Chr11	14185580	14194346	12660440	12660440	8767
FH838_ZH11_DEL1129840	Chr11	14185580	14186458	12600683	12601572	890
FH838_MH63RS3_DEL1119330	Chr11	14185580	14194346	13170906	13170906	8767

>FH838_ZH11_DEL1129840
CAATATGGCTAGGTAAATGATACGAATTTTTTTGTATGGCTATTTTCTGGTTATAGGAAGATAAAAACTCACCGAGCGACGAAAGCTCTGATACCACCTGATGAACCCTGAGTTCCTCTCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACGATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGAAATATGATATTGCAAATAGGAATTTAATACAAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTATCAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGAGACGCAGCACCTTGCTTTTGTGATTGCGGCCAAACGAGATAGATTTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTGCATCAAGTACTCACGGGCCCAAAACGGAGCACGTATGTAGATTTGGCGGCCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAGGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCA