Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FH838_Y3551_DEL0430300

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

13601592

13603551

SV Length:

Query Start:

Query End:

Allele sv Count:

1951 bp

29148022

29149972

39

Gene_id	Chromosome	Start	End
OsY3551G0408816100.01	Chr04	29148003	29148914

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FH838_02428_DEL0435660	Chr04	13601592	13603499	28075461	28077361	1901
FH838_117425_DEL0435130	Chr04	13601592	13603499	26494687	26496587	1901
FH838_125619_DEL0428800	Chr04	13601592	13603499	28681137	28683037	1901
FH838_125827_DEL0427260	Chr04	13601592	13603551	29661846	29663796	1951
FH838_127518_DEL0427630	Chr04	13601592	13603551	28884887	28886837	1951
FH838_127564_DEL0429450	Chr04	13601592	13603551	29161011	29162961	1951
FH838_127742_DEL0424510	Chr04	13601592	13603551	28914733	28916670	1938
FH838_128077_DEL0433860	Chr04	13601592	13603499	26354606	26356506	1901
FH838_132278_DEL0435690	Chr04	13601592	13603499	27559521	27561421	1901
FH838_Azucena_DEL0436740	Chr04	13601592	13603499	26276915	26278815	1901
FH838_Basmati1_DEL0436110	Chr04	13601592	13603499	26044443	26046343	1901
FH838_CN1_DEL0430740	Chr04	13601592	13603551	28311983	28313933	1951
FH838_D62_DEL0428310	Chr04	13601592	13603551	28344540	28346490	1951
FH838_DHX2_DEL0434370	Chr04	13601592	13603499	26947672	26949572	1901
FH838_G630_DEL0425430	Chr04	13601592	13603551	28926458	28928408	1951
FH838_G8_DEL0423990	Chr04	13601592	13603551	28623945	28625882	1938
FH838_HZ_DEL0424320	Chr04	13601592	13603551	29086400	29088337	1938
FH838_IR64_DEL0427580	Chr04	13601592	13603551	27272258	27274195	1938
FH838_J4155_DEL0433110	Chr04	13601592	13603499	27223923	27225823	1901
FH838_J4155S_DEL0435060	Chr04	13601592	13603499	27791828	27793728	1901
FH838_Kosh_DEL0436020	Chr04	13601592	13603499	27744207	27746107	1901
FH838_KY131_DEL0437060	Chr04	13601592	13603499	28172783	28174683	1901
FH838_Lemont_DEL0434590	Chr04	13601592	13603499	27076944	27078844	1901
FH838_LJ_DEL0436100	Chr04	13601592	13603499	27075455	27077355	1901
FH838_NamRoo_DEL0436170	Chr04	13601592	13603499	28031648	28033548	1901
FH838_Nipponbare_DEL0434690	Chr04	13601592	13603499	27686717	27688617	1901
FH838_R498_DEL0427090	Chr04	13601592	13603551	27806917	27808854	1938
FH838_R527_DEL0429770	Chr04	13601592	13603551	28387578	28389515	1938
FH838_R9311_DEL0424650	Chr04	13601592	13603551	28995439	28997376	1938
FH838_S548_DEL0429460	Chr04	13601592	13603551	27868635	27870572	1938
FH838_TM_DEL0427420	Chr04	13601592	13603551	27033252	27035202	1951
FH838_Tumba_DEL0429680	Chr04	13601592	13603551	29354326	29356276	1951
FH838_WSSM_DEL0423900	Chr04	13601592	13603551	28475655	28477592	1938
FH838_Y3551_DEL0430300	Chr04	13601592	13603551	29148022	29149972	1951
FH838_Y58S_DEL0429350	Chr04	13601592	13603499	28882633	28884533	1901
FH838_YX1_DEL0425320	Chr04	13601592	13603551	27370313	27372250	1938
FH838_ZH11_DEL0435870	Chr04	13601592	13603499	27233580	27235480	1901
FH838_OglaRS2_DEL0442140	Chr04	13601592	13603551	24355235	24357160	1926
FH838_MH63RS3_DEL0430830	Chr04	13601592	13603551	29407706	29409656	1951

>FH838_Y3551_DEL0430300
CAAGGTCCAAGTGTACTGCTTCGAGGTCCTTTTATTCAATCAGTGCTTTTCGAGTTTTATGATTTATTCATGACAATACCAGCATGGACAACGTTCCGAGGGGAAAACCAGTCATTTTGATTTCTGACAGTGAAGATGGTAAACCAAATTCTTTTTCCTACTTATTCATGTCCTTTCTTCTTTGTTTCGAACTAAAATGGTGCTTACAAACCAAAAACACGGGAAATATTATTGTAGATGATGATGAAGTTGCTAAGATATATCAAAGCGTGCGCAAGTGCTCCATTGAAAGAGGTGATTATTTTCATATAAATAATTAATAAGTCCAAATGTACAGAATGTTAGGTACTGCTAGTCAGATGATGTGCATGTCAAACTTCCAATTTCAGGTCAATATGGACCTCGCACCTTTCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACATGCAGTACAAAATTGCTCACATTGCTATAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAATTTGACAAAAGGGAAAATGGTATGGTTCACAAATCTGACTGCCCTGTATTTGCATTTGTTTATACATAAATGTCCTGAGTCTAAATGTCTTGTTTATAATTTTTAGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGATTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTACAACTAGATGGAACAAGTTGGTTCAAGCCAATTTATTCGAGCTTGGTGATGTTTGTGTGTTTCTGTTCACTGAAGTTGATGATGACCTATGTATTACTCTTGAGGTTCTCAACTAGTGTAATGGATGAAGAACTTTGATGTGCCCCCTCATAATGTAGTAGTATGCCCCCTCCTAGTGTAGTATCTGCACCTTATGTAATGGATACCATGCAGCAGCTTTTGTTCAACTTTAATGGAGGCCATGCAGCAGCTTATGTTCTAAGTTAAGACTGTTATTCTGATGTAATATATTTATCATCTATTTCCCTAAAATTACCTAGTTGTTTGCATCACTTCAAATCTGATATGGCAAGTGTACAGTTTTTATGCTACTGGAGTTGCTGATTGTTGTTGGAATCACTGCTACAAAATTAAAATGGCTGCCCGTTCTGTTCTGAAAACTAAAAACATGCTACGGAAGCTTCATCTTGATTGTTGCTGGAATACTATACTTAATTGGGCTGAAAACACACAGAACAGAAGCAGCTGGCATGAATACAAATGAGTTTAAGAAACTTTAGTTGGCTGGAATACAAATGTAAGGTGCACACACAAGAGCGTCGGACGATGCAGGAACAACAGAGACCACAACAGCAGGAAGCGACGCCCGAGTATTCCGGCTGGATGCGACGGTGGATGCGGCAGGGTGGAGGCGGCGATTTTGATGCGCCTGGCGTCGTCGTGGATGAGTCGATGCGCCTGCGGATGGCTGGATGAGACAACGAGTTCTTGCGACGGCGGGATGGATGCGCCGGGGTGGAGGCTGCCGCTGTATGCGACGACGGGATGCGCCGCTATTGACGACGGGATGCGGGTTGGACGTCTGCCGCGGCGTCCTCGACGGCGGCAGACGCGTGTTCGACGCGCGGCCGCGGTGGCGTCGAGGGTACGTCGGCCGCGGGGGAATACCTGCGATGAGACGGCGGCTGCGGCGGACAAGATGAGACGCCGGCAACAGATATTGGCGCTTGGCGGCCGCCGCAGACTATTGGCTGGGATGGGCGGTGATTAACGCTACCCTAATTTTGTTTAGCCCCATCATACCCTTCCTAAATCAACGGTCAGATTACATTGATACCTTATGGTACCTCGTATCTCATGGTACACCTCAAGAATAGGAAATATGCTCTCTGAA