Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FH838_IR64_DEL0430570

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

15200022

15202556

SV Length:

Query Start:

Query End:

Allele sv Count:

3109 bp

27264208

27267316

21

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FH838_125619_DEL0431680	Chr04	15200022	15200936	28679227	28680141	915
FH838_125827_DEL0429520	Chr04	15200022	15202556	29653818	29656926	3109
FH838_127652_DEL0432760	Chr04	15200022	15202556	27502175	27505270	3096
FH838_127742_DEL0427150	Chr04	15200022	15202556	28906685	28909793	3109
FH838_Basmati1_DEL0438840	Chr04	15200022	15200936	26042533	26043447	915
FH838_D62_DEL0430950	Chr04	15200022	15202556	28336512	28339618	3107
FH838_G8_DEL0426550	Chr04	15200022	15202556	28615902	28619007	3106
FH838_HZ_DEL0426890	Chr04	15200022	15202556	29078352	29081460	3109
FH838_II32_DEL0423800	Chr04	15200022	15202556	28835283	28838387	3105
FH838_IR64_DEL0430570	Chr04	15200022	15202556	27264208	27267316	3109
FH838_LK638S_DEL0427090	Chr04	15200022	15202556	28833545	28836653	3109
FH838_R498_DEL0429940	Chr04	15200022	15202556	27798869	27801977	3109
FH838_R527_DEL0432540	Chr04	15200022	15202556	28379530	28382638	3109
FH838_R9311_DEL0427390	Chr04	15200022	15202556	28987438	28990546	3109
FH838_S548_DEL0432290	Chr04	15200022	15202556	27860587	27863695	3109
FH838_TM_DEL0430320	Chr04	15200022	15202556	27025224	27028332	3109
FH838_WSSM_DEL0426490	Chr04	15200022	15202556	28467608	28470715	3108
FH838_XL628S_DEL0427970	Chr04	15200022	15202556	28960673	28963781	3109
FH838_YX1_DEL0428040	Chr04	15200022	15202556	27362265	27365373	3109
FH838_ZS97RS3_DEL0422400	Chr04	15200022	15202556	29174618	29177726	3109
FH838_MH63RS3_DEL0433700	Chr04	15200022	15202556	29399678	29402786	3109

>FH838_IR64_DEL0430570
TAGGGCTGTCAAAAAAGCTCGGAGCTCGCGAGCAGCTCGAGCTCGGCTCAAGTTCGACTCGGCAAGGATTCGAGCCGAGCTCGAGCTTGTCTCGAAGCTCGCGAGTTCTACCGAGACGAGCTCGAGCTATTCGGCAGAAGCTTGAAATTTTCACTCCCGCTACCCATCCCAATTTCTCCCGCACTCCAATTCCAAAATCCTACCACCAACAGCAGTCCATCACCTAACCATTTATTTCCCTTATATCCCCATCCCGTATCCAAACCCTAGCTCATTTGCTCTCTTCCTCGAAACATTTCTCTTCTAGATCTACAATCCTAGGCTGCTCTAGTGCTCCACTGACCACTGCTGTGGATCTAGCCAAGCACCGTCTATCCTTCGCCTCTCCTGTCCAGGAAGAACCCCATGGAGGACAGCAGCAGCCCACCGCCTCCGCCGTGAGTGACGAACCGACGACTCGGATCTGAGTAAGTTTCCTCTTCTTTCTTTGTTTCACATTTTTATTTCTTTTGCACCCACATGTATCTAGGGCCCTACATGTATTAACTGTGTAGTGTTTAGTTGCTTGATGGATGTTATTGATTTACATTGAATTTTATGGACTAGGTGGAGACATGGAGTAGTACTTATCTTGCTGTTCTCCTCTTCTGAAGAAAGACTGAAGGTTGCAGAACACCGTGTGTTTGCCATTTGCCAAGGTAAATTGATGGCAATGCTTTTCTTGTTGTACTTGTTTGATTCCTTCCCTTGTGCAGAATATATATTGATAGCAGTTGGTATTTTTATTTTTTGTAGATGTCTGTAAACCTGCAAAGACAGCTATCTGTAGAGATCGAGTCACCGAGCAATAGAGATGGCATAGCAGCAACAGAAGCACAACCGAATCAGCAGCTAGTACCAGGTGAAGTAAGGGGAGAAGAGGGCCAAGAGGGAAACCCAACTAAAGCCACCAGGAAAAAGAAATCTCCATTGTGGGATTTCTTTGAAGAATGCACTGTGCCATCAAAGAAGAAGAAAGGAGAAATGGAAAATAAGGTCAAATGTAAGGCATGTGAAACTCTGCTCACCAAGAATAGTAGTGGCACTACAACACATTGGCGGAGGCATTTAGAGCAGTGTGATTATCACAAGCTTCAACAAAAATCCATAAAACAACAGAATATCAATTTCCCTAGCCTTGATGAAGGTGATGTTGATCTTGATGCTCCTTGTGTTTCTGTCCCTGGTTATTATGATCCTACAAAGATACGTGAGCTTATTTGCAAAATGATCATTGTCTATGAGTTGCCATTTTGCCTTGTGGAGTATACATGGTTTAATGTTTTGCTAAAGAGGCTAAACCCTTCTTACAAAAAGGTCTCTAGAAATACCATTAGAAGTGATTGTATGAGGCTTTATGAATCTGAAAAAGAAAAACTGAAGAGGACTTTCAAAGATGTTAGAAAGATAAGCCTCACATGTGATCTTTGGACCTCTAACCAAACAATTTGCTACATGAGCCTTGTTGCCCACTACATAGATGCTGATTGGTCAATGCATTGTCGTGTTATTAACTTTCTTGAGTTGGAGCCTCCACATACTGGTGTAGTTATTGCTAATGCCATTTCTGATTGTCTTGCTTCATGGAGAATTGAGGACAAGATAGCTAGCATCACATTTGACAATGCCTCAAGTAATGACAGTGCTGCTAACCTGTTGCTTGCCAAGTTTACAAAACGTGGTTCACTTTGGTTTTATGGAAAATTCCTTCATATCCGCTGTTGTGCTCACATTCTGAACTTAATTGTCCAAGATGGTCTGGCTGTGATTAAGCATATAATTGACAAAGTTAGGGACACTATCAAGTACATCAAGAAATCAAACAATCGAGCATACAAGTTCAGTGCTGATATTGATTCTCTCAACCTTAAAAGTGACATGGGTTTGGCTATTGATTCCTGCACAAGGTGGGGCTCAACCTTCAAAATGCTGCAATCTGCATTTTTTTATAGGTCTGCCTTGGATGTATATGCTGCAGGAGATGCAAACTATAGGTGGCTGCCAACACCAGAGGAATGGAATCTATATTGTGAAGTCAATGATGCCCTTTCTGTCATTCATGCAGCCACTGAGGAGTTCTCAGGTTCAACCTACCCAACATCTAACCTTTTTTATTCTCACATTGTCGATATTAAGAGAGTACTAGGTCAGTTGTTGAAGTCCAAAGACCCAATTCTTAAAGAAATGGCAAATGCAATGCTTGAAAATTTTGAGAAGTACTGGGGCCCAGAATGCAATACTTTGTTTGCAGTTGCTTTGGTTCTAGACCCAAGGTTTAAGATGGGTATGATTAACTACACATTCCCTGCTTTGTATGAAGAAACTGTACTTCCTAAGAAACTTGCAAATGTGGAATCCACATTGAAATCTTTGCATGCATCATATGAAAGTGAACTCCAGAGCACATCAAAGGAAAATGATGCCACCACTCAATCTACTAGTACATCTCTGGGCACTACTAGTAGTCATTTCTCTGCTGCTAGCCAATTTCATGAGTATATGAAATCAAAGAATGCTGCTAGTCTTCCTAAGTCAGATTTAAAGAGGTACTTAGATGATCCTGTTGAGGATATTCCTGCAAAAAGTTTCAATCTACTTCAGTGGTGGAGGATGAATGAATTAAAGTATCCAATTGTGGCAAAGTTGGCCAAGGATATTCTTACTATTCCCATCACCTCAGTCTCATCTGAATCAGCTTTCAGCACAGGGGGTCAAGTGATTAGTGATTATCGCAGCTCTTTACTCCCATCAACAGTACAAGCTTTGGTGTGTACATCTAGTTGGATTAGAGGAGGCCACCACAAAAGCACATATTTAGTAAGTTCTTATATTTTCATGTTTCTAACCAATTAATAGAGATACACAATCTAATAATCTATGTTTACTTGTTTGTTGCATACTAGGAGGATGATACTAATTCTATTATCCTTGTCCCAACTCAAGCTTCAACTGCAAATTCGGTTGTGGGCAGCAATTAGACTCGTTTGTCAGGTATATGTTTGAGGTTATATAAATTATCTATTGCTACCATATCAATTCCTCATCATTGATGAAACATTACCTATAATCT