Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FH838_IR64_DEL0430520

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

15195462

15196117

SV Length:

Query Start:

Query End:

Allele sv Count:

677 bp

27267310

27267986

22

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FH838_117534_DEL0433340	Chr04	15195462	15196117	26889743	26890419	677
FH838_125619_DEL0431630	Chr04	15195462	15196117	28680135	28680801	667
FH838_125827_DEL0429480	Chr04	15195462	15196117	29656920	29657596	677
FH838_127652_DEL0432710	Chr04	15195462	15196117	27505264	27505940	677
FH838_127742_DEL0427110	Chr04	15195462	15196117	28909787	28910463	677
FH838_Basmati1_DEL0438800	Chr04	15195462	15196117	26043441	26044107	667
FH838_D62_DEL0430900	Chr04	15195462	15196117	28339612	28340288	677
FH838_G8_DEL0426500	Chr04	15195462	15196117	28619001	28619677	677
FH838_HZ_DEL0426840	Chr04	15195462	15196117	29081454	29082130	677
FH838_II32_DEL0423760	Chr04	15195462	15196117	28838381	28839057	677
FH838_IR64_DEL0430520	Chr04	15195462	15196117	27267310	27267986	677
FH838_LK638S_DEL0427050	Chr04	15195462	15196117	28836647	28837323	677
FH838_R498_DEL0429900	Chr04	15195462	15196117	27801971	27802647	677
FH838_R527_DEL0432500	Chr04	15195462	15196117	28382632	28383308	677
FH838_R9311_DEL0427340	Chr04	15195462	15196117	28990540	28991216	677
FH838_S548_DEL0432240	Chr04	15195462	15196117	27863689	27864365	677
FH838_TM_DEL0430280	Chr04	15195462	15196117	27028326	27029002	677
FH838_WSSM_DEL0426440	Chr04	15195462	15196117	28470709	28471385	677
FH838_XL628S_DEL0427930	Chr04	15195462	15196117	28963775	28964451	677
FH838_YX1_DEL0427990	Chr04	15195462	15196117	27365367	27366043	677
FH838_ZS97RS3_DEL0422360	Chr04	15195462	15196117	29177720	29178396	677
FH838_MH63RS3_DEL0433660	Chr04	15195462	15196117	29402780	29403456	677

>FH838_IR64_DEL0430520
ATAATCTTTGCACATGGTTTCAGATATAACTTTACGAAACATTAATGCATGCATATAGCATAGCATCAACAATTAGTTTGAAGAAAGTGCTTGGAGGTTTCACATTGGCGTACTGCCATTGCCAATAGTGGAGTAAATATTTTGTGACAGTTGAAATTTGAAGTACGCTGTGTTAGTAGTATAAGTAATATTTAGATATTAGAGCTTTTAGATGGAACATATGTTGGGAACTTCCGGTGGGCTACTTTTGATGTTAATTGATGCTCTATGTTCTTTCAAGTCATTGACACATGATATTGTAATGTTTCTTATGGTGTTATACACACCGGTCTATTATAAAGTAGTAATCCTATTATGACTTATGCACTACTATGAATTTGTAATCTTTCTAGTATATACCTGTCGAGAAGCTATTATATTCTATTATGAATTTGTAATCCTACTTTGGCTTGTTAAGAAGCTTTTATTGGGAGATAAGTTCAGATTGCTGAAGGAAACAGTCTTAACGAGCTTCTACGAATCGAGCTCGAGTCGAGCCGAGCCTTGATCGAGCTCGAACCGAGCCTACCTTCAAGCTCGAAGGTAATGCTGGGCTCGGCTCGAGCTCGGCTCGAGCCTGTACTGAGCTCGAGCTTAGGTAGGTAAGCTCGCTCGAGCTCAGCTCGTTGACAGCCCTA