Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FH838_132278_INS1129220

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-adm: FH838 | FH838

Os GJ-subtrp: CHAO MEO | Os132278RS1

Chr11

14190815

14192149

SV Length:

Query Start:

Query End:

Allele sv Count:

1330 bp

11844646

11845975

21 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FH838_117534_INS1123580	Chr11	14190815	14192149	21885482	21886802	1321
FH838_117534_INS1123580_1	Chr11	14190815	14194350	12371571	12375107	3537
FH838_127518_INS1117270	Chr11	14190815	14194348	12913866	12917395	3530
FH838_127652_INS1127380	Chr11	14190815	14192149	13112738	13114066	1329
FH838_132278_INS1129220	Chr11	14190815	14192149	11844646	11845975	1330
FH838_D62_INS1116910	Chr11	14190815	14192149	20905126	20906445	1320
FH838_DHX2_INS1125800	Chr11	14190815	14191950	12011289	12012412	1124
FH838_DHX2_INS1125800_1	Chr11	14190815	14192149	11769376	11770705	1330
FH838_FS32_INS1118340	Chr11	14190815	14192149	21511479	21512802	1324
FH838_FS32_INS1118340_1	Chr11	14190815	14192149	12501577	12502905	1329
FH838_G630_INS1119130	Chr11	14190815	14194346	13529537	13533070	3534
FH838_G630_INS1119130_1	Chr11	14190815	14194350	13240951	13244488	3538
FH838_II32_INS1113290	Chr11	14190815	14192149	23429965	23431278	1314
FH838_J4155_INS1115800	Chr11	14190815	14192149	22737344	22738662	1319
FH838_J4155S_INS1116020	Chr11	14190815	14192149	23103811	23105130	1320
FH838_NamRoo_INS1129860	Chr11	14190815	14192149	12265383	12266709	1327
FH838_R9311_INS1120700	Chr11	14190815	14194346	13201199	13204724	3526
FH838_Tumba_INS1118470	Chr11	14190815	14194350	12803606	12807143	3538
FH838_XL628S_INS1114920	Chr11	14190815	14192149	23185540	23186859	1320
FH838_ZS97RS3_INS1114190	Chr11	14190815	14192149	23600273	23601592	1320
FH838_MH63RS3_INS1119340	Chr11	14190815	14194346	13302702	13306236	3535

>FH838_132278_INS1129220
CTTGCGTATCCCTGCCATTGTTAGTAGAAAACAAGAAACATACACAAAAATATGCGCGTTCCTATTAACTACTAGGTAGTGGCAGCTCAAAAATCGCACACACTCAAGCTTTTAACCAAGCTCTTACAAGATCTTACCAATGCAAGTGGAATGGTGACATACACCGACTCAACCAAGCACCCCAATGAAGGTTGGATGTATCGATGCCTTGGCAAACACTTGCTGTACAGCTGTAATCAAATATGTGGAGCTCTGGGTAGGCTTAAATATGTAGCAAAGGAATAGCAAATGCTCAAATCAGATAATGCAAAGTTGAATAATTGTTCAAAGTCAAGTACCGTGCTGGTCCTAGGCTAGAACGTACTAGAGACGCGAGCCTAGACACAAACGATACCACAAGATAGCACTAGGAACAACTCATGCACAACTCTGATATATGAAGTTCAGCTCAAACATAACAGTGTTTTCTCTTTTCTTTCTTTCTTCTTTCTTCTTTTCTTTTTTTTTCTTTCCTTTTCTTTTCTGTTTTTTTTTGGTGCGGCTTTTTTTTTCTTTTTTTTTTTGCACCTTTCTGCCTTTTTTTTCACTTTTTTCTTGATTTTTTTTAACAAAAACTGACTCAAGGACCTTAATGTAAGATTACAGGGACTCAAACATAAATATAAAATTTACAGGGACTCAAATGTAAAAGTCTAAACCCAAAATTAAAATTATACAAAAAATGGAATGCTGAATTTATGCCAGTTCCGTTTTTCCAAACAAATCTCGAAACCGACACCAAACAAAAATTCGCCAAGGTGTTTGACACAACTCGGAACCGTGGAAGAGAGGGAGGGAGTCGGACTCGGCCAAAGGGGCGAGTGGGACTCGGCTAGGAGGTGGAGTGGCTGGCAGCCGAATTTGGTGTATGGGATAAAAAGGAAACTGATTTTTAACCAATCCAATCTACTATATCTTTCCAAAACAATCTTGACTACTTCCAAAATCAGATATGGTAATTCACCTTCCTCCTCTTGTGCACAACACAGGCACGGCCAAAACAAGCACACACAAGGATCGGCAAAGTCTAGATGCAACTCAAGAACTCCAAAACTAACTGACAGAAACTTCTGAAAACTACAAAAATAGAACCGTGGCAGCGAGCCGATTCCGTTTTCGTAGGTCCCGACAACAACAGAGACACGGTGGCAGCGACGACTGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAACTAGACGCTAAGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAATATG