Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: DHX2_127742_DEL1120020

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-temp: DHX2 | DHX2

Os XI-1B2: PR 106 | Os127742RS1

Chr11

11757649

11762051

SV Length:

Query Start:

Query End:

Allele sv Count:

4415 bp

13601296

13605710

20 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
DHX2_117534_DEL1115780	Chr11	11757649	11762055	13152685	13157070	4386
DHX2_127742_DEL1120020	Chr11	11757649	11762051	13601296	13605710	4415
DHX2_127742_DEL1120020_1	Chr11	11757649	11762051	13663791	13668210	4420
DHX2_132278_DEL1107210	Chr11	11757649	11762053	11705893	11710299	4407
DHX2_G630_DEL1119950	Chr11	11757649	11762055	14208054	14212438	4385
DHX2_Kosh_DEL1104690	Chr11	11757649	11762055	11752697	11757103	4407
DHX2_KY131_DEL1106590	Chr11	11757649	11762055	12066992	12071398	4407
DHX2_Lemont_DEL1110710	Chr11	11757649	11762053	12038305	12042708	4404
DHX2_LJ_DEL1104320	Chr11	11757649	11762055	11849615	11854021	4407
DHX2_NamRoo_DEL1107000	Chr11	11757649	11762055	11701460	11705866	4407
DHX2_Nipponbare_DEL1106000	Chr11	11757649	11762053	12068944	12073350	4407
DHX2_R498_DEL1119840	Chr11	11757649	11762051	13455174	13459537	4364
DHX2_R527_DEL1119330	Chr11	11757649	11762055	13995456	13999841	4386
DHX2_R9311_DEL1120680	Chr11	11757649	11762055	14170391	14174769	4379
DHX2_S548_DEL1119740	Chr11	11757649	11762051	13223914	13228329	4416
DHX2_YX1_DEL1119780	Chr11	11757649	11762051	13383743	13388106	4364
DHX2_OglaRS2_DEL1124150	Chr11	11757649	11758437	11730714	11731504	791
DHX2_MH63RS3_DEL1120090	Chr11	11757649	11762051	13302704	13307119	4416
DHX2_MH63RS3_DEL1120090_1	Chr11	11757649	11762051	13813383	13817797	4415
DHX2_MH63RS3_DEL1120090_2	Chr11	11757649	11762051	13878410	13882829	4420

>DHX2_127742_DEL1120020
atgaaccctgagttcctctcgacactcaaggctgttgttggcccgatctttcggtgagttgtgataactacgatttgggagaaacgttgacgatccgactacaaccgtacgagacgttgtgttgcgccttagcgatcgatacacctctccgtgggttgttgatcttgccggtgcagatcaaccctattcctgcaagcaaatcgaagaaacaagcaagaacaagataaaagcaatctgatattgcaaataggaatttaatacaaatgataagttggggttccgaagaacaagcagacggacggtctagccaacacgcgcgctgcaagcaagtagcaatggctaaactttaatctaacaaaaccccagaaaccctgaaggggtacctaactatttatagaggtgggaggacgaccaagagggtccaagggtcgtgctccaccagattggggcgcaccccacatgggccccacatgggccagggtcccaaacaaagttacaagcccattggcccaatacaggtgatgcagcaccttgcttctgtgattgcgaccaaacaagatagaattccgagatgaggctggatccgttggaaggaggacttcgagagctttccatcaagtactcacgggcccaaaacggagcacgtatgtagatttggcggccgtttgaagtcagcaatgtaacacgtggccaaatcagattgcagcacatggaagacttgatcttgatgtcttcttgttgattcatgatgtgagcaatggtcgtatccatagtagccatggtcacatcatccttcccttcttcacagaaaaccgtcctcggtttttccatatggtgctcttcgcgcagtccgctgaaaacaacctgtttcttgcaatcaaaacaagacaaactcgagacaatatgattagcagtaacatgtctctctagcttgcatattttatccggaactacaagatgttctaaatctgaacaaatgtaaactctatgcaccaaaaatattcctctatcattatattcgccaaagatatgaaaaatagcattagttggccatggcaaatcagatttatcaaataatttctccttcaaattatcgagctcacaaaaatcatcaaactgaacatagcccaaagtatttaaagaagataacaattcgcgttcctctacttcattagtaatgtgaacaacatgcttagaatcagcacacaaagaaatggtagaactaacatgttcattcactagttgtggcatggatataagtgaaacattatcacacaactcttctttatcacaaggaacagcaagtaaatcaacttgtgacaaaggcaactcagcaattgattccactaatggttgctctactatagcatgaaaagtggacaagtgtagctcaccttgagaatactcaccttcatttctctcagcaccatttaatttaccttgcgaactttcttcagataatgtagctgcatcagccttctcctcattcgcgagtgatggaagtgacatctcaaacatatcgttcttctcattttggagacttttctgaacttcctgcaaaacatcagtgataggaggcacaagcatatcttgttgctccgttggattctccaaaattttgcgctcaacaatgcaagcaagcatgaacaattggcctatatgattatatgtcacattaacaagcccagcctgaatattgaaattaagccctctgaaaaatctagtcattgtgttctcattagattcttgtaaaccactataagtgatacaaattttaaaatcatgaaagtactccctaacagttttgtcaccttgttttagatgttcccatttctcaaggagagcacgtctatagtatgaaaacacaaatctttttctcatcagtattttgcattcatcccaagtttcaagcttattccccacagtatgccaccaaaaagatgcagaaccggtacacttattactagcagccttaatcatttgagcattagaaaaatcatactcatcaaattgtttttctactgctagctcccaattaatgtatgcagcggaatcatactttccatcatagactggtaacttacatgcaacttgtgcaaaattatagtcatgtacctcatatgcatcacgtgaagaagtcgtcatatctcgtcgaaggtgtagatgttgacgttgagcatgaccatcttgtttccccttgcgcaatcctgccatggttagcagcaaacaagaaacatacacaagaatatacacgctcctatcaactactaggtagtggcagctcaaatctcacacacactcaagcttttaaccaagctcttacaagatcttaccaatgcaagtggaatggcgatgtacaccgactcaaccaagcaccccaatggaggttggatgtatcgatgccttggcaaacacttgctgtacggctgcaatcagatctgtggagctctaggtaggcttaaatatgtagcaaaggaatagcaaatgctcaaatcagagaatgcaaagttttataattgttcaaagtcaagtactgtgctggtcctaggctagaacgtactagagacgcgagcctagacacaaacggtaccacaaaatagcaccagaaacaactcaagcacactctgatgtatgaaagcaaactcaaagatacaactaatttttccttttgcttctttctttccttttctttcttttctattttcttttctttttcttttctctttttttttcttggtgcggcttttcttctcttttttttatgcacctttctgccttttttttctttcTttttttttattttttttaccaaaaactgactcaaggaccttaatgtaaggttacagggactcaaacataaatataaaatttacagggactcaaatgtaaaagtctaaacccaaaattaaaattatacaaaaaaatggaatgctgaatttatgccggttccgtttttccaaacagatctcgaaaccgacaccaaacaaaaattcgccaaggtgtttgacacaactcggaaacatggaagagagggagggagtcggactcggccaaaggggcgagtgggacacggcaaggaggtggagtggatggcagccgaatttggtgtatgggataaaaaggaaactgatttttaaccaatccaatctactatatctttccaaaacaaacttgactacttccaaaatcagatatggtaattcaccttcctcctctcgtgcacgacacaggcacggccaaaacaaacacacacaaggatcggcaaactctagatgcaactcaagaactccaaaactaaccgacagaaacttctgaaaactacaaaaatagaaccgtggcagcgagccgattccgtttttgtaggtcccgacaacaacagagacgcggtggcagcgacgactgtggtacaaaacgtgaccagaactcgaaactctaaacgagctagacgctaagaccagcaacacgacgtgacgatgcaacacaaaattcaacaaagcaaaaactgaaaagaacaatgcaatggcacaatatggataggtaaaagacacaattttttttgtctggctattttctggttataggtagaagaaaactcaccgagaaacgaaagctctgataccacctgatgaaccctgagttcctctcgacactcaaggctgttgttggcccgatctttcggtgagttgtgataactacgatttgggagaaacgttgacgatccgactacaaccgtacgagacgttgtgttgcgccttagcgatcgatacacctctccgtgggttgttgatcttgccggtgcagatcaaccctattcctgcaagcaaatcgaagaaacaagcaagaacaagataaaagcaatctgatattgcaaatagggatttaatacaaatgataagttggggttccgaagaacaagcagacggacggtctagccgacacgcgcgctgcaagcaagtagcaatggctaaactttaatctaacaaaaccccagaaaccctgaaggggtacctaactatttatagaggtgggaggacgaccaagagggtccaagggtcgtgctccaccagattggggcgcaccccacatgggccccacatgggccagggtcccaaacaaagttacaagcccattggcccaatacaggtgatgcagcaccttgcttctgtgattgcgaccaaacaagatagaattccgagatgaggctggatccgttggaaggaggacttcgagagctttccatcaagtactcacgggcccaaaacggagcacgtatgtagatttggcggccgtttgaagtcagcaatgtaacacgtggccaaatcagattgcagcacatggaagacttgatcttgatgtcttcttgttgattcatgatgtgagcaatggtcgtatccatagtagccatggtcacatca