Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: DG_Y3551_DEL1229310

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

19636883

19637872

SV Length:

Query Start:

Query End:

Allele sv Count:

990 bp

5548739

5549728

12 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
DG_127742_DEL1231210	Chr12	19636883	19637872	11855313	11856303	991
DG_CN1_DEL1227640	Chr12	19636883	19637872	5531435	5532409	975
DG_D62_DEL1228050	Chr12	19636883	19637384	20798012	20798513	502
DG_FH838_DEL1229690	Chr12	19636883	19637872	5548416	5549405	990
DG_G630_DEL1232130	Chr12	19636883	19637384	20906112	20906613	502
DG_IR64_DEL1229080	Chr12	19636883	19637869	7644795	7645779	985
DG_R527_DEL1228660	Chr12	19636883	19637384	20246005	20246506	502
DG_R9311_DEL1229490	Chr12	19636883	19637872	11943381	11944371	991
DG_S548_DEL1228790	Chr12	19636883	19637384	20587707	20588208	502
DG_Y3551_DEL1229310	Chr12	19636883	19637872	5548739	5549728	990
DG_OglaRS2_DEL1252930	Chr12	19636883	19637872	6950696	6951685	990
DG_MH63RS3_DEL1229470	Chr12	19636883	19637872	5551981	5552970	990

>DG_Y3551_DEL1229310
GCTTTACGGAATAAATTGTTGTCTACCGTCATTATTGCTTTCCTTCCGAGAGTCCCCTTTCCCCGTAGTCTCCCTTCATGGCGTGATTCAGGTACCCTGATTGGGCGAAGGTCTTCAATAAATTCTATGCAGAATTCAATGACCTCCTCTGTTCCATACCCCTTGGCGATGCTTGCCTCTGGACGAGCACGGTTACGAACATACTTCTTCAGAACGCCCATGTACCTCTCGAAAGGAAACATGTTGTGTAGAAACACAGGCCCGAGAATACCGATCTCTTTCACTAGGTGACAAAGCAGATGCGTCATTATATTGAAAAATGAAGGTGGAAATATCAACTCAAAGCTGACAAGACATTGCACCACATCATTCTGAAGAGCTTCTAACCTATCCAGATCGATGATCTTCTGCGAAATTGCGTTCATGAAAGAACATAGCTTTGTTATTGTTGCCCGGACATTGTCTGGGAGGATACCCCTTATTATAACTGGTAGCAGTTGTGTCATCAACACGTGACAGTCATGAGACTTTAGGTTTGTGAACTTCTTCTCCTTCGTGCTTATTATTCGCTTTATATTCGTGGAGTATCCAGATGGTACCTTGATGCTCTCCAAGCATTGAAACATACTTTCCTCCTCTCCCTTGCTAAGAGTGTAACTGGCTGGACTCAAGTAATGGATGCCTTTCTCCTTTGGTTCCGGGTGAAGGTCACCACGTTGTTCCATATGCTTCAGATCATTACGTGCTTCCAGTGTATCTTTCGACTTTCCATATACACCTAGGAAGCCAAGAAGGTTTACGCAAAGGTTCTTAGTGAGGTGCATTACGTCGATTGCGTGGTGGACGTCCAAGAATTCCCAATAGGGTAACTTCCAAAATATGGAGTTTTTTTTCCACATCGCCGCGTGACCATCTTCGCTCTCTATAGGCTGGCTGCCAGGCCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACATTGTT