Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Basmati1_Y3551_DEL1210790

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr12

7640205

7643785

SV Length:

Query Start:

Query End:

Allele sv Count:

3579 bp

5548309

5551887

5 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Basmati1_FH838_DEL1210880	Chr12	7640205	7643785	5547986	5551564	3579
Basmati1_Nipponbare_DEL1208290	Chr12	7640205	7643785	6113139	6116718	3580
Basmati1_R498_DEL1211680	Chr12	7640205	7643785	5562945	5566523	3579
Basmati1_Y3551_DEL1210790	Chr12	7640205	7643785	5548309	5551887	3579
Basmati1_MH63RS3_DEL1210940	Chr12	7640205	7643785	5551551	5555129	3579

>Basmati1_Y3551_DEL1210790
ACCAGTCAACCTAACCCATTGGCACTGGAACAGAGGGACCTTGAGAGGTCCATATTCAAGTTTCCATATCTCCTCGATGGCACCGTAATACGTGCCAGTTGTACCATCGTGTCCCATGGCATCGATACGAACAGCACTGTTCTGGTTCGTGCTCTTCATGTCTTGGGCTCTTGTGTAGAATGTGTACCCATTGATCTCATATCCCTGGAATGTCGCGATCGAGCCAGATGGACCCCTCGCCAGGAAGGCCAATTGCTGGTTAATCGTCTCGTTACCCATGAGATGTTGTCGTAGCCATGCGGGGAAAGTATCAATGTGATGCCGTGTAATCCATGCATCGGACTTACCGATGTTTCTGGCGCGAACTAGAGCCAAGTGCTCCTCGATGTAAGGAGCCACCAATGAAGATTGTTGTAAAACCGTGAAATGGGCTTTACGGAATAAATTGTTGTCTACCGTCATTATTGCTTTCCTTCCGAGAGTCCCCTTTCCCCGTAGTCTCCCTTCATGGCGTGATTCAGGTACCCTGATTGGGCGAAGGTCTTCAATAAATTCTATGCAGAATTCAATGACCTCCTCTGTTCCATACCCCTTGGCGATGCTTGCCTCTGGACGAGCACGGTTACGAACATACTTCTTCAGAACGCCCATGTACCTCTCGAAAGGAAACATGTTGTGTAGAAACACAGGCCCGAGAATACCGATCTCTTTCACTAGGTGACAAAGCAGATGCGTCATTATATTGAAAAATGAAGGTGGAAATATCAACTCAAAGCTGACAAGACATTGCACCACATCATTCTGAAGAGCTTCTAACCTATCCAGATCGATGATCTTCTGCGAAATTGCGTTCATGAAAGAACATAGCTTTGTTATTGTTGCCCGGACATTGTCTGGGAGGATACCCCTTATTATAACTGGTAGCAGTTGTGTCATCAACACGTGACAGTCATGAGACTTTAGGTTTGTGAACTTCTTCTCCTTCGTGCTTATTATTCGCTTTATATTCGTGGAGTATCCAGATGGTACCTTGATGCTCTCCAAGCATTGAAACATACTTTCCTCCTCTCCCTTGCTAAGAGTGTAACTGGCTGGACTCAAGTAATGGATGCCTTTCTCCTTTGGTTCCGGGTGAAGGTCACCACGTTGTTCCATATGCTTCAGATCATTACGTGCTTCCAGTGTATCTTTCGACTTTCCATATACACCTAGGAAGCCAAGAAGGTTTACGCAAAGGTTCTTAGTGAGGTGCATTACGTCGATTGCGTGGTGGACGTCCAAGAATTCCCAATAGGGTAACTTCCAAAATATGGAGTTTTTTTTCCACATCGCCGCGTGACCATCTTCGCTCTCTATAGGCTGGCTGCCAGGCCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACATTGTTTTCCCGCTGCGATGTTTAGGCTTCGTACGGTGGTCCGCCATATGTTCAAAGTGCTTGCCTTTCTTCCGTACTGGGTGGTTTGCTACAAGGAATCGACGATGACCCATGTACACAACCTTCCTACAGTGCTTAAGATACGTACTTTCTGTTTCATCCATACAGCGAGTGCAAGCCTTGTACCCCTTGTTGGACTGCCCGGATAGGTTGTTAAGTGCAGGCTAATCGTTGATGGTTACGAACAGTAGCGCTCGTAGGTTAAACTCCTCCTGTTTGTCCTCATCCCACACGGGGACACCTTCCTTCTTCCACAACAGTTTAAGATCTTCGACCAGTGGTCTTAGGAATACATCGATGTCGTTACCAGGTTGCTTGGGGCCTTGAATAATAATCGGCATCATTATGTACTTCCTCTTCATGCATAGCCAAGGGGGGAGGTTGTAGATACACATCGTAACGGGCCAAGTGCTATGGCCGCTGCTCATCTCTCCAAAAGGATTCATGCCATCCGTACTTAAACCAAACCGTATGTTTCGTGCGTCCTTTCCAAAGTCTTTAAATTTTCTGTCGATGTTTCGCCACTGCGAACCATCTGCGGGGTGTCTCAGCATCCCGTCCTGTTGACGTTCTTCAGCATGCCAACGCATCATTCTAGCATTCCCCTTGTTCCTGAACAAACGCCTTAGCCGTGGTATTATAGGGAAATACCACATCACCTTAGCAGGAATTCTCTTCTTCGTTAGCTGCCCGTCAACCTCACCTGGATCATCTCGTCTAATCTTGTATCGTAGTGCTTTACAAACAGCGCATGCTTCTAGGTTCTCGTACTCCTCACCACGATATAGGATACAATCATTCGGACATGCGTGAATCTTCTGAACTTCCAGTCCTAGAGGGCAGACTATCTTCTTAGCCTCGTACGTTGTCTCGGGCAATTTGTTTCCCTCCGGAAGAATGTTCTTGACGAGTTTCAATAAATCGCCAAATGCCTTGTCACTACCACCATTTTTTGCCTTCCATTGCAAGAACTCCAGAGTGGTATCCAACTTTTTGTGCCCCTGCTCGCAACCTGGGAAAAACGACGTTCTGTGATCCTCTAACATCTTGTCCAATTTATGGGCCCCCTTTTCACTTTCGCAGTCCTCCTTGGCATCCTGCAACATCTGACCAAGATCATCTGCAACGTCGTTATAATCAGCATCTCTATCCTCCTCGCCCGTTTGATTTCCTTCAGATCCAGCGTACTGAGCAAAGTCTAGAATATTGTCGTCTTCCACTTCATCTTTTTCCATTTCAACCCCTTGCTCTCCGTGGGATGTCCAACAATTATAGCTTGGCATGAACCCCGACTCAAACAAGTGGAAATGAATAGTCCTGGATGCAGAATACTCCTTCTGATTCTTACACTTATTGCATGGACAACATTTAAAACCCTTCTGCTTTAGTTTTGGCCACTCTCAAGAAATAATGCACGCCATCAATAAACTCTTCGGACCACCGGTCAGCGTACATCCATTGCGGATCCATCTACATGAAATGAAAAAAAAATCATACACAAATAATCATTCGTACAATAATGGTAGTTATACAATAATGATAAAATAATCACAAACTCTTTCAACAGTCATACAATAATGACATATCATTATTCATACAAAAATTATAAAATATTCCACCAAATAATTCTTATTTATTATTTTTTAAGTTTTAAATTCTTTTAATTTTCAATTTAGTTTGTTTTCTTTTATTTAAGATTAACTTTCACTATATTTTCCTACTCAACTATTTTATAAAACCTTATTTAGAAAATAAACAAAATTTCTATATATTCTTTCTTTTCCCACACAAATTTTCTCTCTCATCAACTTACAACAAAATTTTGAGACAAAAAAGTGTGCAAAACATAGCTCCAAATGTAATATGACCAAAAAAAAACATTGGAGGATGAAGTTGCTAACCTTTTAGGCAGCTTCGATTTGTATATAATCACCAAAGTAAATTCACTATAAATTTTGGCATGACCTCCCTTCTTTTTTGAAGAAATTTTGAAGCTTGCTCGGGCTGGAGGAGAAAGAAGACATATATAAAGGGGTGGGACTTTAGTCCCGGTTGGTGTTACCAACCGGTACTAAAGATCACCGGGAACTTTAGTCCCGGTTGGT