Variation ID: Basmati1_Tumba_INS0444460

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
INS
Os cB: Basmati1 | Basmati1
Os XI-3: Tumba | Tumba
Chr04
21082017
21085953
SV Length:
Query Start:
Query End:
Allele sv Count:
3878 bp
29350371
29354248
53
There is no gene in this region.
SV_id Chromosome ref_start ref_end query_start query_end length
Basmati1_125619_INS0449120 Chr04 21082017 21085953 36347344 36351294 3951
Basmati1_125827_INS0443930 Chr04 21082017 21085953 29657890 29661768 3879
Basmati1_127518_INS0447100 Chr04 21082017 21085953 28880930 28884809 3880
Basmati1_127564_INS0445540 Chr04 21082017 21085953 29157054 29160933 3880
Basmati1_127742_INS0441100 Chr04 21082017 21085953 28910757 28914655 3899
Basmati1_127742_INS0441100_1 Chr04 21082017 21085953 36651429 36655379 3951
Basmati1_132424_INS0447550 Chr04 21082017 21085953 29792907 29796805 3899
Basmati1_132424_INS0447550_1 Chr04 21082017 21085953 37348875 37352825 3951
Basmati1_CN1_INS0444420 Chr04 21082017 21085953 28308027 28311905 3879
Basmati1_CN1_INS0444420_1 Chr04 21082017 21085953 36157127 36161077 3951
Basmati1_D62_INS0442880 Chr04 21082017 21085953 28340582 28344462 3881
Basmati1_DG_INS0445520 Chr04 21082017 21085953 28727461 28731339 3879
Basmati1_DG_INS0445520_1 Chr04 21082017 21085953 36401994 36405944 3951
Basmati1_FH838_INS0443620 Chr04 21082017 21085953 28797191 28801069 3879
Basmati1_FH838_INS0443620_1 Chr04 21082017 21085953 36360980 36364930 3951
Basmati1_FS32_INS0443700 Chr04 21082017 21085953 28420266 28424144 3879
Basmati1_FS32_INS0443700_1 Chr04 21082017 21085953 35936465 35940415 3951
Basmati1_G46_INS0443770 Chr04 21082017 21085953 27886940 27890818 3879
Basmati1_G630_INS0440890 Chr04 21082017 21085953 28922502 28926380 3879
Basmati1_G630_INS0440890_1 Chr04 21082017 21085953 36506112 36510062 3951
Basmati1_G8_INS0444600 Chr04 21082017 21085953 28619971 28623867 3897
Basmati1_G8_INS0444600_1 Chr04 21082017 21085953 36332839 36336789 3951
Basmati1_HZ_INS0441250 Chr04 21082017 21085953 29082424 29086322 3899
Basmati1_HZ_INS0441250_1 Chr04 21082017 21085953 36781794 36785744 3951
Basmati1_II32_INS0444340 Chr04 21082017 21085953 28839351 28843229 3879
Basmati1_II32_INS0444340_1 Chr04 21082017 21085953 36562118 36566068 3951
Basmati1_IR64_INS0441020 Chr04 21082017 21085953 27268280 27272180 3901
Basmati1_IR64_INS0441020_1 Chr04 21082017 21085953 31730445 31734363 3919
Basmati1_IR64_INS0441020_2 Chr04 21082017 21085953 34934297 34938247 3951
Basmati1_J4155_INS0439180 Chr04 21082017 21085953 34834223 34838172 3950
Basmati1_J4155S_INS0439480 Chr04 21082017 21085953 35458920 35462872 3953
Basmati1_R498_INS0445200 Chr04 21082017 21085953 27802941 27806839 3899
Basmati1_R498_INS0445200_1 Chr04 21082017 21085953 35497799 35501749 3951
Basmati1_R527_INS0446840 Chr04 21082017 21085953 28383602 28387500 3899
Basmati1_R527_INS0446840_1 Chr04 21082017 21085953 36048984 36052934 3951
Basmati1_R9311_INS0444400 Chr04 21082017 21085953 28991510 28995361 3852
Basmati1_R9311_INS0444400_1 Chr04 21082017 21085953 36665546 36669491 3946
Basmati1_S548_INS0446800 Chr04 21082017 21085953 27864659 27868557 3899
Basmati1_TM_INS0442500 Chr04 21082017 21085953 27029296 27033174 3879
Basmati1_TM_INS0442500_1 Chr04 21082017 21085953 34536493 34540443 3951
Basmati1_Tumba_INS0444460 Chr04 21082017 21085953 29350371 29354248 3878
Basmati1_WSSM_INS0442710 Chr04 21082017 21085953 28471679 28475577 3899
Basmati1_WSSM_INS0442710_1 Chr04 21082017 21085953 36140268 36144219 3952
Basmati1_XL628S_INS0444300 Chr04 21082017 21085953 28964745 28968641 3897
Basmati1_XL628S_INS0444300_1 Chr04 21082017 21085953 36800963 36804913 3951
Basmati1_Y3551_INS0447550 Chr04 21082017 21085953 29144065 29147944 3880
Basmati1_Y3551_INS0447550_1 Chr04 21082017 21085953 36856485 36860435 3951
Basmati1_Y58S_INS0442350 Chr04 21082017 21085953 36660589 36664539 3951
Basmati1_YX1_INS0440570 Chr04 21082017 21085953 27366337 27370235 3899
Basmati1_ZS97RS3_INS0444280 Chr04 21082017 21085953 29178690 29182568 3879
Basmati1_ZS97RS3_INS0444280_1 Chr04 21082017 21085953 36903562 36907512 3951
Basmati1_MH63RS3_INS0447500 Chr04 21082017 21085953 29403750 29407628 3879
Basmati1_MH63RS3_INS0447500_1 Chr04 21082017 21085953 36975562 36979512 3951

>Basmati1_Tumba_INS0444460
TGTAGCGCCCGTTCCGTCGTGGCGCCTAGTGGGAAAATTATCTCTTAAAAACCCTAATTGCGAAATTTGTTTCTTTGCTTGTTGTCTAGTGTCCATGCCATCTGAAGATCTCAAATCCCCGATATATCGTCGAGTTCAATTCCGAATCTAAATCCTTCCAAATCAAATCCCTCCGCAAAAGTCTATTTTGCCTCCCCCGGGGTCGATGGGCCGAATCTCTTTCGGCCCATCTCCCCCTCCCTCCCGGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTTCCCCTCGCTCTGCCCGCGCGTGCGCGAGCGCCGCGCCGAGCGCCCCCTCCCCCTCGCTCTCCTTCTCCCCATCCCTGGCGAGCTCCCCGCCCGCGAAGCCGGCCCCCGCGCGCCGTTGTTCGCGCGCGCGCCCGCGTGGTTGCCACCCGTGCCGCGCCGCCTGCGCCGTCCGCGTCACCCGGCCCCGTTGCCCTGCCGCGCCTGCAGCCGCTTGGCCCCGCAGCCAGCGCGCGTGCCCGAGCCGAGCCACTCAATCCGCCGCGCCTCCCGTTGCAAGCCGCGCGCGAGAGCCGTGGTGGCCGACCGCCTGGTCGCCACCATCGTCAGCGCCTGCCCGCGCCTGTCGCCCGTGTCACCGCCTCGCCGTCATCACCGTCGTCATCGCCTCGGCCCCGCCACTCCGCGCGCAAGCCGCCAAGGGACGGAGGCAGAGCCCCTCCTCCCTCTACCACGTCGCCCCCGCTCCCCTCCTCCTTTTCCCAAAGAGGCAAGGGGCGAGCCCCCTTTCTCTCCCTCATTTTCCCCTTTTTCCCCCCGCCGGCGTCATCCTCCCTCCGTCCTGTCGCCGATTTGGCCGCGAGCGCCGAGCGCCAGCTCGCGCCTTGACCGCCCAAAGTCGGTTTCCAAACCGACATTGCCGCCCTTTAAACCCAGGCGCCCTCCCTTCCTCTTTCCCCCCAATCCTCCCCGTTTCTCGTCCGCGCCATTGCCGCCACCTCCTGTGCTCTGTCTCGCCTCCGCCGTTCATCGCCAAGCACCGGGAGAGCCGGTGCGTTCGTTGACGCGGAAGGGGACTCCGGGCGCTCGTCTTCCTCCTCTTCCCCGGCCCGAGGCCGGAGAGATCACTCCCGCGCCGTCGGCCTCTCGTCACAGCGCCCCGCCTCATCTCGGTAGTGCCTCCCTCCGTTCTTCCTCCTCGTTCCATCTTCCCCCCTTAGTTTTCGGTAGTAGCACGAGTAGCCTCCCCGTAGCTAGCCGGCGCCGCCCCGACCATTGCCGCTGCTCGCCGTGTGCCCGCCACCGTCGCCGCCCGTGCTTCGTAGCACCCGCTCGTCGCCGGCCTCGCTCGGCGTAGCTCCGCCTAATCTGACGCTAGCAACGAATTCCCGTAGCCGCGTAGATGCTCTCACCGCCGGGAATTGGCCCCTCGTGACCTCGTCGCCGTTTCCCCCTTTTCCCTCCGCCGGGCGCCGCTGCCGCAATCCGCCGCCGACGGACTCCCTCCGGCGAATCCAAGCCGTTGGCTCGCTCCCTCTCATTCTCCCTCGTCATCCCGGTGTACGCCCCGTCGCCCCTCATCGTCGCAAGGCGTCCCGGAGAAACCACCGCCGCCCGCCGTCCATTCGCGGCCGGCACCTTCGTCTTCCTCCCGCCAGCCCGCGTGGCAGCCACGTAGGCGCCACGTCGGCGCCAGCTCGGCCGAGATCGGATCGGGCCGACCCCGGTCAGCCCCTCCCGTGCGCGCGTTCCACCGCGAGCCGTGAGGCTACGTGTGGGCCCACCGCATCCGTTCCACCGCGAACCACGCGCGTGCACCGCATCCCTTCCCCGCCCGTGCGCGTGCGCCGCGTGCTCGCTCAGCACGGTGAACCGTGTCACCGACAAGCGGGTCCTACCCGGGACCACGCGTGGTGAGCCCGGTCCACCGGCCCTCCCTCTCCTCCCCTTCCGCGCGCGCGCTTGGGCTGCCTTGGGCCGGTCGGCCCATTTAGCTCGGCCGGACCGCTCCGTTTCTCTCGGGCCGCGCCCTAGCCGCCCGAGGAAAAGTATATTATCCCTCCCTCTTTTCTTTTCTTTTTCAAAAAGGATTTAATTAAATCCTTTTCCTTTAGACCAAAAATCCAATAATCTTAGAAATTCAATATCTTCCCAACCGTAAATCCGTTTGACTCCGTTCCACTTCCAAAATTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTAATAGGGCTTTATTTTCGCCGTTTGTTGAGTTGTCCCGTTTCGCGTGTAGTTTCGGAGCCCGAAGACCCGCAGTGCGAGGATTTTGAGGATCAAGCTCCAGATTTCGAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATTTGAATTTAATTATATTGCTTGAAAAATATTATGCATTGATAGGATCGCACTTAATCTGTTTGTCCCGTCTGCAAGGCAGATTGGCGGACCTACCTAGTTTGTTGCATTTGATCCTTCCTTTGTTAATTGTTATACCATGTTCCCTTGTAACCACCCAGTTGCGCCTCGGGAATCGTGCACTCTGTGCGAGTACCGACGGTCGCCTTCAAACTTCAAATCTGAGTAACAACTTGGGTTTTACAAAAGACTTGGAAAACCCGACACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAACCGCGGACCGGGGAACGTACCGGGTGTACGGTTTTCCCGCTCTTGCACCTAAGGACCGTTTCCTTAGAATTTCATCCAAACATAAGACAAGTACGACCACATGGGTGGAATGGGACACCCCTGGCTGAGTAACTAGCTTATCAGGGGAGCCTTGATGCCGAGAGACATGTGGATTCGCCGGGGTGGTGTCGGGGAGGACCCCTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTCGGCATATGGTAAACCTGTGTCGGCTTTGGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGTGGCTGATCCCCACGGGCTGGGTGATCCGGGTTAGTAATGTCGTGTGGGTAAAGTGTATCCCCTCTGCAGAGGTTAACAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTCCTAGCGTAGTTTGTTTGACTACTGCTTGTGAAATTGCTGTTGTGGAAAGGGGTTCGATGTTTGAAAAATCTGCAGCTGATGGGATCAGCTAGGCCCGGGTGGCCGTTTGAAAGTTGTTGGCCCGGGTGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGATTCAATTCTAAAGACTGATACATTGCACATACTCCGACCGGACAAGACGCACTGTCTTATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTTCAGAAAGGAGTTCAAATAAAATCAATTGTAAAAACAACAGACTTTTCTTGAAGCCTGCATTAAACACTTATTTCCCATGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATAAATAATCCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAGGAGTTCTTCCAAGAGCAAGCCGGCTACGATGAGTATTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGTTGTTTGGTCCAAGTCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATAATCCGTCTTCCTATGATAACAACACTATTTTCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAGTTTCGGTCGGTACTAGTCCGGGGCGTGACA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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