Variation ID: Basmati1_MH63RS3_INS1243330

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
INS
Os cB: Basmati1 | Basmati1
Os XI-adm: Minghui 63 | MH63RS3
Chr12
24910085
24910085
SV Length:
Query Start:
Query End:
Allele sv Count:
7204 bp
23328896
23336099
34
Gene_id Chromosome Start End
OsMH63_12G0329900 Chr12 23330075 23339780
SV_id Chromosome ref_start ref_end query_start query_end length
Basmati1_125619_INS1241720 Chr12 24910085 24910085 24416143 24423347 7205
Basmati1_125827_INS1247090 Chr12 24910085 24910085 23811319 23818524 7206
Basmati1_127518_INS1246670 Chr12 24910085 24910085 23919109 23926312 7204
Basmati1_127564_INS1246510 Chr12 24910085 24910085 23465250 23472454 7205
Basmati1_127742_INS1249370 Chr12 24910085 24910085 23093102 23100306 7205
Basmati1_128077_INS1240190 Chr12 24910085 24910085 23826649 23833853 7205
Basmati1_132424_INS1246670 Chr12 24910085 24910085 23569486 23576689 7204
Basmati1_Azucena_INS1234770 Chr12 24910085 24910085 24620499 24627702 7204
Basmati1_D62_INS1240150 Chr12 24910085 24910085 23469861 23477064 7204
Basmati1_DG_INS1245400 Chr12 24910085 24910085 24614820 24622021 7202
Basmati1_DHX2_INS1241400 Chr12 24910085 24910085 25271373 25278576 7204
Basmati1_FH838_INS1242870 Chr12 24910085 24910085 23408135 23415338 7204
Basmati1_G46_INS1244760 Chr12 24910085 24910085 24318632 24325835 7204
Basmati1_G630_INS1243310 Chr12 24910085 24910085 23569787 23576990 7204
Basmati1_G8_INS1247430 Chr12 24910085 24910085 23632279 23639482 7204
Basmati1_HZ_INS1249390 Chr12 24910085 24910085 23102589 23109793 7205
Basmati1_II32_INS1247050 Chr12 24910085 24910085 23018385 23025588 7204
Basmati1_IR64_INS1248940 Chr12 24910085 24910085 22641328 22648532 7205
Basmati1_J4155_INS1245010 Chr12 24910085 24910085 24084932 24092135 7204
Basmati1_J4155S_INS1245600 Chr12 24910085 24910085 24300488 24307691 7204
Basmati1_Lemont_INS1237350 Chr12 24910085 24910085 24331778 24338981 7204
Basmati1_R498_INS1246350 Chr12 24910085 24910085 23654431 23661634 7204
Basmati1_R527_INS1247760 Chr12 24910085 24910085 22888245 22895448 7204
Basmati1_R9311_INS1249900 Chr12 24910085 24910085 23036455 23043658 7204
Basmati1_S548_INS1248090 Chr12 24910085 24910085 23233820 23241023 7204
Basmati1_TM_INS1245860 Chr12 24910085 24910085 23319604 23326807 7204
Basmati1_Tumba_INS1246620 Chr12 24910085 24910085 25162901 25170105 7205
Basmati1_WSSM_INS1245860 Chr12 24910085 24910085 23159313 23166516 7204
Basmati1_XL628S_INS1246850 Chr12 24910085 24910085 24246706 24253909 7204
Basmati1_Y3551_INS1242780 Chr12 24910085 24910085 23283754 23290958 7205
Basmati1_YX1_INS1249690 Chr12 24910085 24910085 23565863 23573067 7205
Basmati1_ZS97RS3_INS1245750 Chr12 24910085 24910085 24209204 24216407 7204
Basmati1_OglaRS2_INS1264670 Chr12 24910085 24910085 22335312 22342518 7207
Basmati1_MH63RS3_INS1243330 Chr12 24910085 24910085 23328896 23336099 7204

>Basmati1_MH63RS3_INS1243330
TCCTGGTAATGTCTTGTTCTGATCTCTGTTATTGTCTTGCTGTTCAGGTGTCAGCTGCACTACAAGAAACTGACAAAGTCTACTACAACATTCTTTAAATATTGCTGTTCTTTTTTATCTCCTTTTACTTTGTAGAAAAGGGAAATGATTCTAGCATATGTCAGCAGATTCCTTGCAGCCTTTGGTGTTTAATACTAAAAATTAAATATGCCATGACTTTATCCACACCTAGCTGAGCTGTTTTTTCATGTGAGTTTCCTTTTCAAGAAAAGATAAGCTGCCAGCCTCTGGAGTCTGGTTCATGTGTGAAATAGTAACACACATTGTGCTTCACAGAAATGCAAGTACAGTACTCACAAGTACAAGAAGTATGGTGTTTTGGTGTGCCCTTCCCTATATATGTGCCTAGGGAAGATTCTCACAAGTACAGATTCGTCGGCACTGAGGCTGCTTCCCTTCAGAAGTATCAAGCATTAGCTTGCAGGACTTCCAGAGGTAAGAGATCTCTTGTCTAGTGTCTTAGTGATCTTTAGATCATGCAATGAGGACTACCTTGCATGCATGCTTGCATCCTAGTGGACAACTTGCTGTTTTCTCAACACATGATTCATGCAAACTCAGAAATATGCATTCTCTTCTGAGATAGCTTATGATTTGAATGATAGTACATTAGTACTTCTAACTTTATTTGAAATGCATATAACTTTCAGACCCTTTCGATTTGTTTAATCTTAATCCACAAAAACACAAGTTGAGGCTATCGTAGGTTGGAAGATCAGATACCGTTAGGTTTTCTTTCTTTCTAGTTGAGTTTGACATTAACTTGGAAACTTTTGTAGATCGACTTGTGCCATATAGCTACATAGTTTTTGCCTACTTACCATTGCAAATGACAGGGGATATGAAGTTCATGCTCAGGCAACCACTTAGTTCTTGAAACTAGTGCAAAAATACTAAAAAAGGTTAAGAACTTGGAATGCAATCCTAGATACGAATTTAGGGATCCGATCATTGTAAAGAACTTCTGCAAATTCGTTTCCACTATATACGGAAGTACAAACTTTGTTATACACCATCTTGACATCTTGGATTAGATTATCATCTTTGTTATTTCTGCCTGTTACTTGCTAAGCTTGCACATAAGGGTTATCGTTTGATGTTTCTGTAACAACTTCATCTTATGAAACATTGCAGGAACAATCACATGATGAGAAAATCTTTCACAACATGCAAGGAATGTATTTTTTACCATTACTGGAACCACATGGGTGATCAAAAAAGGAGTTTCATCAATGTTATGATTGGTGATTTTGTGGTAAGACCTAGTAACTGTTTTTCCCTTGATACTTGGATGATCATACCTTTCTGTCCTAATGGCCTTCATGAGCCATGAGGTGCACTCTAAATTGGATGTTGGTCTTATTTGTCTATTCCTGCAGGCAGTACCAACAAAATTTGCAAACTTTATCAGAGGGCAGATATCTGAAGTAGTCAAGCTAGAGGTGCCAAATGGTAAAACATATGATGTTCACGTTGCCAAGGAACATAACGAGCTGGTCCTTCGATCTGGATGGGGGGCATTTGCTAGAGATTATGAGCTCAAACAGTGTGATATATTAGTGTTCACATACAGTGGGAGCTCTCGCTTCAAAGTTCGAATCTTCAATCCAAGTGGTTGTGAGAAAGAGTTATCCTGTGTCATGATGAACAACACTCCTTGTGGCCATGAAGGGAGCATGTCTTATCATGACAACCATTTGCAATCACCAAGTGAAAGGTTGGTGAAAAGCATTTTGTTTTCCAAGAAGCAACATTCTGTGGAACTCTATTATGTCATATACTTAACTATCTACAATTATAAATTAGCAAAAATACTACTCCCTCCATTCTTTTTTGTTTGACGTTGGTTAGCTCAAAATTGAACCAACCATTGTCAAACATTTGGAGAAGGAGGTACTTCCCCCGTTTCAGGTTATAAGACTTTCTATATGTTAATGAATTCATTAACATATATATGAATGTGAGCCAACACTAGAAAGTCTTATAACCTGAAATGGAGGTAGTAGTATTTTTGAGTGCAACTTGCCACATAGTTGCATGCCTCCACTTATTTCATTATTTCATGATAACCATTGGTTATGTGTACACAGCTGTGGATGGATTTGATTAAGAGTCTCTCTTAAAAAAATCATCTCAATTAACAAAGTCTTTTCACAGCAGGAGCATGTCTCATACAGTATGCATGGAGTGTACTGCAAGTTGTTATTGGCACAACATGAATAAAAGGCGTTTCTTCGTTGTTATGATGGATGTGGGTGATTTCCAAAAAGAACTGGTTAGGCCTTGTCATTTACGCTGTTAATGAGCACCAAGATATATCTTATATACTTGTTATGATATTCATTTTGGGGAATTTGAGAAACTGGGTTAGCAATTTGGTAATCTGATAGTTCTAAAACTTTTTTTTTTTTGCTAGGAAGAAGTTGCATTAATCAGAAATAGAACCCTTACATTAATTCTTGATGGATTAGGATACGCCTGTGCTTACATGACCAAACCAAAAGGCTATCTAAAGCCCCCACATGACCCACATTAGCAAGTTCATGACTAACTCTATTTTGATCATCAAGTAATCCTCTGAATTTTAATTGTCGTTCCTCCAGATAGCAATCCTCATGTTCCAGTATTCAGGAACAATAGATACGACTGTTCCCTGTCCTTGCTCTTGCAGCTCTTCATTCTTCAATATATCGCTGCCACCTCACAGTCCGTTTCAAGAATTATCTGGAGTAGGCTCCACTAGCTTGCTAGTTTCAGATCCTCCCAACATGCAACAGTTCTGCCTCCGGTGCTCCTGGACAAACCCGAAGCGCCTTGCAAAGCCATCATTAGCCATAGCTTCACTGAGCCATCAACATTTAGCATTTGACAAGTAGTCTGAGAAACAAAAATCATGTAAACTCTTAGCTACTGAATTCAGCAGCACAGACTGGTTGAACCAAAAAAGGGAAAAAAAATGATAAAACAGGACACGGTGTATGTTTATTCTAAAGATAGAGAATGACACTTTGAAGGTAGAATCCTTCTTCCCCGCAAAAAAAAAAAAGGAAAAAAAAGAAGAAGGTAGAATCCTTCTTCTTTTTTCCCCTGTTTCATGAGGCTTTGATTTGTTCCTAAGAACAAAGTGGACTTCAGTCCTGCTCACAAATTATGTCTGTACAGCATTCTTCATTTCTTCTGTAGGTTGTGTTCTTATGTAAACGGAATGTTTCATTTTTTTTGTTCCTACAGACCATACTGAAAATGTTTGCAAAGAATGTCCAAGGTCTGATTTCTGGAGTAGCCAAACTAGAAGTTCCAGATGGCAAAACATATGATGTTGAGATATCTAAGGAACATAATGAGTTAGTATTTCGATCTGGATGGGAGGTGTTTGCCATTGCTTATGAACTCGAACAGGGTGATATCTTGGCTTTTGGTTACAGTGGGAACTCCCACTTCAAAGTTCAGATATTTAATCCAAGTAATTGTGAGAAAGAGTTATCCTGTGTTGTGATGAACAGGAGCATCTCTGATGATAACCATCGACAATCACCCAGAAGGGAAAGGTTGGTATAAATGTTGAAGGGGTAGATTTAGTTACCTATTGTGCATTCTTAGAAGCATATTTTTGTCTGCTCATCATTTTCTTATTTCTATATGTACCATTATAAATTCCCAACATTGCTGAAGTTTATTTTGAAGTGTTATTTATCTTTGCCTCAGTACTTGTTTATGTACTGCTATAATCACAATTTGGTTATTCATATTGAACTTCTCAGTGTTGTTCTCTCTGTAAAAAAAGCTTTCAATGTGTTAACTATGTGAGGGTGACGCGTGCATGCATATGCTTATGGACTTTTTTCCGATGTTCACGAAGAATTTCATCATAATAAGCATTGTAAATGTGGATACAGGATGAACAAGCCTAGCACAACATGCATGGACTGCATTACAAATCATTATTGGCTCCATATGGATGACAGGGAAAGATATTTCTTTAAGGTTATGATGAGTGTGAGTGATATCAAGGATGAACTGGTAAGATCACATCTATTATTCTGTTCTTGTACACAAAATTTATATTTTAGATTGCTTATTTTGGAAAAGTTGGTGACCTTGATTCCTTGAGGTTGGGAGTACGACAGTCAGTTTTGATTACTGATAACCATGCTTGATTAAAATTCATCAATGCACAAAGCATGTCAGAATAACCATATCTATTTCGATATTTGACAATAGAAAGCATGCAGGCACTTGGTTTTCTAGTGAAACTAGTAGCATAGGCCTGTTTTTTTCCTATATATATAAAAGAAGGAACTTTAGGCATGATGGCGAACCCTTCTTTTTTGATAACAAGGACAGTGGGCCCATTAGAATTGATTGTGTTTACAGGGACTTGTATAAAAGCTCTCTTTTGTTTATTACCATAGGCTATACCGAAAAAGTTTGCGGCCAATGTCAGAGGGAAGATACCTGAACAAGTCAGACTAGAAGTGTCAGATGGTAAAATGTATAACGTTCAAGTTACTGAGGAACAGGATGAGCTGGTCCTTCGATCTGGATGGGAAAATTTTTCCAGTACTTACCAACTTAAACATGGTGATCTCTTGGTGTTCATACATAGTGGGCACTCCCACTTCAAAGTTCTAATATTTGATCCAAGTTGTACCGAGAAAGAGTTCTCCTGTGTTGTGACGGACAACACTAGTCATGTGCATGAGAGGAGCATTTCTCATGATAATCATTTGCAATCACCAAGGAGTGAAATCTTGGGAAAGAATTATAGTCTTTGCTCTAGTAGGAAACGGTCAAGGATGAATCCAGCAGACTATCCTTCACAGAGACCAGGTAAACATTTGAAGTGTACAATCTACATTTGCAACATTGCTTACATTGCCTATGTGTACCAAAATTTACATAGTTGGTGTACTGCAGACGTCCCATCTTCTGAAGACATTAAGGATCCCATGAGTTCAGGTGGCCTCCAGAAGTCAAAAAAGTCTTGCTATGTTTTACCAATGTTGTACAATATGACTAGTGCACAAGAGGCAGAAGTTCTCGCTCTTGAGAAGAAAATTCAACCTCAAATTCCACTGTACATCACAGCTATGGACAAGACAAGTGTGGCAAGTGGATCACTGGTATGTTTTTTATTTTTTTTGTATTCGGTATGGTGCAACTTTTTGCTAGTTTGAACTTTGCTAAATTTTGGTGTTCTGCTCTAGTCAAGAAAAAAAAGAGAGAAAAACTCAGGTTACATTTAGGACTTGATTAGTGTTAGTTGAGTCTTGAGTCCTTCAAATATACTAATGAAAGCTTGTAAAATAATATATTCCTGATCATTTGTATAGGTCTTCTGTAAGAATTATGCTGTCAGATATCTTCTTGACCAAAATAGGACCATCAAACTATGTCAATCTGGTGGTAGCAAGACATGGGACATCAGTTTGGACATGGACACTGATGATCTATATGCCCTCTCTACTGGCTGGTTGGACTTCTTTCGCGGCAATCTGTTGCAAGAAGGTGACATCTGTGTATTTGAAGCTTCAAAGAGCAAGAGAGGAGTGGCATTAACATTTCATCCTTTCAAAGAAAGTCATTGCCCAAAGTCATCAGGTTATCTATATAGCATTTGGAATAGCCTAGATTTTATTTTCTATGAGCGCATCTCTTTCTCTTTTTTTTTCTGTTGACAACACATTTCTGACTGACGTCCATGTTTTTGATTGGGTCTTCTCTGCAGAATATACCCTTTCCACCAAGAGTCCTACACGTAGAGTTCCTAAGCGGGACTATTTTGCAACAAATCTTACTAATCTAACTGATCAACAAGAGAGGAAGGTTAAAAACAAAATAAAATCTATACAGTCTGATATCCCCATTTTCTTGTCTGTCATGCGCAGTTCCAACTGTACCCGTCAAAGTTCTCTGGTGAGTCATCATTGAATTTGTTTGAAATTTTATTCCTGTTGATTTGCAAGTTGGAACATTTAAAATCATGCATGAAATGGGCAGCAAAATTCGCAACCTTTTCCTTTACTCATATTATCAGGGAAACTTACATTTTCCATATATTCAGTGCTTCAGCGTGAAATACGCTTCAAAGTATCTCCCACATAAAGACCAAAATATGAGGCTGCGGCTGCCGGAGACGAAATATAAGTGCAAAGCTGCGTTACATATCGACACAAGCACCAATCTTCACAAGCTTCTCAAAGGCTGGGGGAAATTTGTCAACGATAACAAATTAGAAATACATGATATCTGCCTCTTCCAGCTTATGAAAAACAAGAAAAAGCTTACAATGACCATCCATATCATTCGAAAAGGCGAGTGCAGTTGATCCATATGTTCCTGCTGCTCTGGGTGTTTTGTAATAAAGGTGGTGCTTTTGTACTAGAAACGCCATGCTTGTGGATAGGGTACTGGTGTTCCCTCTCTTTCGAATTGCCTGCAACAAACTATTAATGTGCCGAACCTTCTAGTTTTAAGAACTTACAGTAAATGGTTATGATGTTGCTTCCTGGCCAGTTTGGATGTGTGAATTTTATTCGCTTTAATTTATTCTGAATTCTGACTATTTCAAGAAACACTAAAGTGGACACTTAGGAATCGTATATGAAGTTCAGAATAAACTTATTATTTATTACTCTTAGGTAATGATACCTGATCAATGGGCTTGCAACTTCACTATTGCAGCTGAGGTTGCTAGACTGAAAAGGTGGTTTTGTGCAATTTAAAACTGGTATTTTATTCTATTAGGTTCAACCTGTTTATGTCTTTTAGAAATAGAACTGCCCAGTTGGGTTTAAAATTTTAGCAAGTATCTGTATTTATCTTGTGTCAACAATAGTCGTCTATAGTCTCAGTTTCAGTGTGGTGTTGTGCAACTTAACCTTTCTTGTCATCTGCTCCCTTTTTATGTTCAAGTTTTTCTGCCAGGATGATGATCTGGAAATTGAGTGACTCAATAACTTTGATCTGAAGAAGCATCATCAAACTGTTTCTATTTCTGTGAGCACATTTATTCGTCTTTGTTTAATGTACTCCTGAAATCTGTGTCTGCCCTAGCATTGGTCTATAACACTAGTTTCTTCAGTAATGATGTTGTGTATCAATGATACAGAAAGTATGCAACAGCATGCAATTATGCTTGTGG

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Huazhong Agricultural University

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