Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Basmati1_IR64_DEL0444060

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

26040073

26041892

SV Length:

Query Start:

Query End:

Allele sv Count:

1792 bp

27270389

27272180

24

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Basmati1_125827_DEL0447360	Chr04	26040073	26041892	16164425	16166247	1823
Basmati1_127564_DEL0449090	Chr04	26040073	26041892	28346559	28348377	1819
Basmati1_127652_DEL0454730	Chr04	26040073	26041892	27508348	27510140	1793
Basmati1_127742_DEL0444330	Chr04	26040073	26041892	28123519	28125337	1819
Basmati1_132424_DEL0452220	Chr04	26040073	26041892	30323870	30325687	1818
Basmati1_CN1_DEL0447520	Chr04	26040073	26041892	27512440	27514258	1819
Basmati1_D62_DEL0446470	Chr04	26040073	26041892	15896506	15898327	1822
Basmati1_DG_DEL0448770	Chr04	26040073	26041890	27932404	27934218	1815
Basmati1_FH838_DEL0447330	Chr04	26040073	26041892	27990961	27992779	1819
Basmati1_FS32_DEL0447120	Chr04	26040073	26041892	15762166	15763988	1823
Basmati1_G46_DEL0447100	Chr04	26040073	26041892	27889040	27890818	1779
Basmati1_G630_DEL0444420	Chr04	26040073	26041892	28116259	28118077	1819
Basmati1_G8_DEL0447640	Chr04	26040073	26041892	16147606	16149427	1822
Basmati1_IR64_DEL0444060	Chr04	26040073	26041892	27270389	27272180	1792
Basmati1_R498_DEL0448760	Chr04	26040073	26041892	27015697	27017515	1819
Basmati1_R527_DEL0450030	Chr04	26040073	26041892	27596341	27598159	1819
Basmati1_TM_DEL0446910	Chr04	26040073	26041892	14503682	14505504	1823
Basmati1_Tumba_DEL0447800	Chr04	26040073	26041892	28539895	28541713	1819
Basmati1_WSSM_DEL0445980	Chr04	26040073	26041892	28977306	28979123	1818
Basmati1_XL628S_DEL0447330	Chr04	26040073	26041892	16336121	16337942	1822
Basmati1_YX1_DEL0443740	Chr04	26040073	26041892	26579075	26580893	1819
Basmati1_ZS97RS3_DEL0447680	Chr04	26040073	26041892	16484357	16486179	1823
Basmati1_OglaRS2_DEL0459660	Chr04	26040073	26040685	20598706	20599321	616
Basmati1_MH63RS3_DEL0451050	Chr04	26040073	26041892	15955510	15957332	1823

>Basmati1_IR64_DEL0444060
TAAATTCTTTTCCTTTAGACCAAAAATCCAATAATCTTAGAAATTCAATATCTTCCCAACCGTAAATCCGTTTGACTCCGTTCCACTTCCAAAATTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTAATAGGGCTTTATTTTCGCCGTTTGTTGAGTTGTCCCGTTTCGCGTGTAGTTTCGGAGCCCGAAGACCCGCAGTGCGAGGATTTTGAGGATCAAGCTCCAGATTTCAAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATTTGAATTTAATTATATTGCTTGAAAAATATTATGCATTGATAGGATCGCACTTAATCTGTTTGTCCCGTCTGCAAGGCAGATTGGCGGACCTACCTAGTTTGTTGCATTTGATCCTTCCTTTGTTAATTGTTATACCATGTTCCCTTGTAACCACCCAGTTGCGCCTCGGGAATCGTGCACTCTGTGCGAGTACCGACGGTCGCCTTCAAACTTCAAATCTGAGTAACAACTTGGGTAAAACTTGGGTTTTACAAAAGACTTGGAAAACCCGACACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAACCGCGGACCGGGGAACGTACCGGGTGTACGGTTTTCCCGCTCTTGCACCTAAGGACCGTTTCCTTGGAATTTCATCCAAACATAAGACAAGTACGACCACATGGGTGGAATGGGACACTCCTGGCTGAGTAACTAGCTTATCAGGGGAGCCTTGATGCCGAGAGACATGTGGATTCGCCGGGGTGGTGTCGGGGAGGACCCCTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTCGGCATATGGTAAACCTGTGTCGGCTTTGGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGTGGCTGATCCCCACGGGCTGGGTGATCCGGGTTAGTAATGTCGTGTGGGTAAAGTGTACCCCCTCTGCAGAGGTTAACAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTCCTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTGTTGTGGAAAGGGGTTCGATGTTTAAAAAATCTGCAGCTGATGGGATCAGCTAGGCCCGGGTGGCCGTTTGAAAGTTGTTGGCCCGGGTGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGATTCAATTCTAAAGACTGATACATTGCACATACTCCGACCGGACAAGATGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTTCAGAAAGGAGTTCAAATAAAATCAATTGTAAAAACAACAGCCTTTTCTTGAAGCCTGCATTAAACACTTATTTCCCATGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATAAATAATCCCCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAGGAGTTCTTCCAAGAGCAAGCCGGCTACGATGAGTATTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGTTGTTTGGTCCAAGTCCTGGCTTCCATTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATAATCCGTCTTCCTGTGATAACAGCACTATTTTCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAGTTCCGGTCGGTACTAGTCCGGGGCGTGACA