Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Azucena_G46_INS1124600

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-trop1: Azucena | AzucenaRS1

Os XI-1A: G46 | G46

Chr11

12241581

SV Length:

Query Start:

Query End:

Allele sv Count:

333 bp

13223127

13222795

32

Gene_id	Chromosome	Start	End
OsG46G1120965300.01	Chr11	13220555	13226896

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Azucena_117534_INS1117390	Chr11	12241581	12241581	12715413	12715081	333
Azucena_125619_INS1123840	Chr11	12241581	12241581	12682165	12682497	333
Azucena_125827_INS1121670	Chr11	12241581	12241581	13688377	13688045	333
Azucena_127564_INS1122200	Chr11	12241581	12241581	12542174	12542506	333
Azucena_127652_INS1126630	Chr11	12241581	12241581	12514542	12514874	333
Azucena_127742_INS1123530	Chr11	12241581	12241581	13367681	13367349	333
Azucena_132424_INS1124950	Chr11	12241581	12241581	12599245	12599577	333
Azucena_CN1_INS1123650	Chr11	12241581	12241581	14184703	14184371	333
Azucena_DG_INS1124900	Chr11	12241581	12241581	14771889	14771557	333
Azucena_FH838_INS1125940	Chr11	12241581	12241581	14374740	14374408	333
Azucena_G46_INS1124600	Chr11	12241581	12241581	13223127	13222795	333
Azucena_G630_INS1121420	Chr11	12241581	12241581	13626067	13625735	333
Azucena_G8_INS1121690	Chr11	12241581	12241581	12707070	12706738	333
Azucena_HZ_INS1126730	Chr11	12241581	12241581	13135405	13135737	333
Azucena_II32_INS1122960	Chr11	12241581	12241581	14243496	14243828	333
Azucena_IR64_INS1124730	Chr11	12241581	12241581	12715604	12715272	333
Azucena_J4155_INS1123850	Chr11	12241581	12241581	12498923	12499255	333
Azucena_J4155S_INS1127200	Chr11	12241581	12241581	13149644	13149976	333
Azucena_LK638S_INS1127260	Chr11	12241581	12241581	13181694	13182026	333
Azucena_R498_INS1122010	Chr11	12241581	12241581	13119238	13118906	333
Azucena_R527_INS1124100	Chr11	12241581	12241581	13414478	13414146	333
Azucena_R9311_INS1122960	Chr11	12241581	12241581	13297703	13297371	333
Azucena_S548_INS1123070	Chr11	12241581	12241581	13320451	13320119	333
Azucena_TM_INS1123100	Chr11	12241581	12241581	14098831	14098499	333
Azucena_Tumba_INS1121500	Chr11	12241581	12241581	13151618	13151286	333
Azucena_WSSM_INS1120420	Chr11	12241581	12241581	12924427	12924095	333
Azucena_XL628S_INS1127650	Chr11	12241581	12241581	13175782	13176114	333
Azucena_Y3551_INS1122590	Chr11	12241581	12241581	12995127	12995459	333
Azucena_Y58S_INS1116770	Chr11	12241581	12241581	13881635	13881967	333
Azucena_YX1_INS1121640	Chr11	12241581	12241581	12889145	12888813	333
Azucena_ZS97RS3_INS1127380	Chr11	12241581	12241581	13282456	13282788	333
Azucena_MH63RS3_INS1122240	Chr11	12241581	12241581	13399251	13398919	333

>Azucena_G46_INS1124600
TTTGTAGGGAGTACCATCACTATTTTCTGATCTTAGCCCATTGTATGAGCAACCTGGCAAGGTAATAGCAGTTATGCTTCTCAAAATCATTTTTTGTACTTCTTTTTCTCTGTTGTAGCATGATCTTTCAGATTGCCCTACATAATGTTTATTTTTTATACCTATAGCCATATTGATTACTTCAGATTTGACATGGAAAAATGTGAAATATTTAAAAGAACTCAGATTCAGTCAGAACTATTGTGTAAGCATGCATAGAAAGCTACCCTAAATAGACTTGATGCCCATTTGTCAAGTACAGCCTACATGTGAAGTAATCTAATACAAGCAGTT