Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Azucena_127742_DEL0432120

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-trop1: Azucena | AzucenaRS1

Os XI-1B2: PR 106 | Os127742RS1

Chr04

12993997

12994653

SV Length:

Query Start:

Query End:

Allele sv Count:

677 bp

28909787

28910463

21

Gene_id	Chromosome	Start	End
OsPr106_04g0022670	Chr04	28906579	28916265

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Azucena_117534_DEL0432260	Chr04	12993997	12994653	26889743	26890419	677
Azucena_125619_DEL0431810	Chr04	12993997	12994653	28680135	28680801	667
Azucena_125827_DEL0432750	Chr04	12993997	12994653	29656920	29657596	677
Azucena_127652_DEL0434370	Chr04	12993997	12994653	27505264	27505940	677
Azucena_127742_DEL0432120	Chr04	12993997	12994653	28909787	28910463	677
Azucena_D62_DEL0432920	Chr04	12993997	12994653	28339612	28340288	677
Azucena_G8_DEL0432850	Chr04	12993997	12994653	28619001	28619677	677
Azucena_HZ_DEL0431960	Chr04	12993997	12994653	29081454	29082130	677
Azucena_II32_DEL0431770	Chr04	12993997	12994653	28838381	28839057	677
Azucena_IR64_DEL0431010	Chr04	12993997	12994653	27267310	27267986	677
Azucena_LK638S_DEL0432450	Chr04	12993997	12994653	28836647	28837323	677
Azucena_R498_DEL0429460	Chr04	12993997	12994653	27801971	27802647	677
Azucena_R527_DEL0429300	Chr04	12993997	12994653	28382632	28383308	677
Azucena_R9311_DEL0432740	Chr04	12993997	12994653	28990540	28991216	677
Azucena_S548_DEL0428940	Chr04	12993997	12994653	27863689	27864365	677
Azucena_TM_DEL0431700	Chr04	12993997	12994653	27028326	27029002	677
Azucena_WSSM_DEL0432240	Chr04	12993997	12994653	28470709	28471385	677
Azucena_XL628S_DEL0433130	Chr04	12993997	12994653	28963775	28964451	677
Azucena_YX1_DEL0429980	Chr04	12993997	12994653	27365367	27366043	677
Azucena_ZS97RS3_DEL0432190	Chr04	12993997	12994653	29177720	29178396	677
Azucena_MH63RS3_DEL0430700	Chr04	12993997	12994653	29402780	29403456	677

>Azucena_127742_DEL0432120
ataatctttgcacatggtttcagatataactttacgaaacattaatgcatgcatatagcatagcatcaacaattagtttgaagaaagtgcttggaggtttcacattggcgtactgccattgccaatagtggagtaaatattttgtgacagttgaaatttgaagtacgctgtgttagtagtataagtaatatttagatattagagcttttagatggaacatatgttgggaacttccggtgggctacttttgatgttaattgatgctctatgttctttcaagtcattgacacatgatattgtaatgtttcttatggtgttatacacaccggtctattataaagtagtaatcctattatgacttatgcactactatgaatttgtaatctttctagtatatacctgtcgagaagctattatattctattatgaatttgtaatcctactttggcttgttaagaagcttttattgggagataagttcagattgctgaaggaaacagtcttaacgagcttctacgaatcgagctcgagtcgagccgagccttgatcgagctcgaaccgagcctaccttcaagctcgaaggtaatgctgggctcggctcgagctcggctcgagcctgtactgagctcgagcttaggtaggtaagctcgctcgagctcagctcgttgacagcccta