Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 132424_Tumba_DEL1226430

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-2A: GOBOL SAIL | Os132424RS1

Os XI-3: Tumba | Tumba

Chr12

17391948

17395096

SV Length:

Query Start:

Query End:

Allele sv Count:

3150 bp

9351174

9354323

18

Gene_id	Chromosome	Start	End
OsTumbaG1226926000.01	Chr12	9339950	9381838

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
132424_117425_DEL1230220	Chr12	17391948	17395096	11061667	11064819	3153
132424_117534_DEL1233950	Chr12	17391948	17395095	7756609	7759758	3150
132424_127518_DEL1219140	Chr12	17391948	17394070	11266882	11269009	2128
132424_127742_DEL1227280	Chr12	17391948	17395096	8958838	8961987	3150
132424_128077_DEL1232570	Chr12	17391948	17393401	17075527	17076984	1458
132424_128077_DEL1232570_1	Chr12	17391948	17395095	16413403	16416567	3165
132424_132278_DEL1235330	Chr12	17391948	17395096	17065832	17068981	3150
132424_CN1_DEL1216040	Chr12	17391948	17392647	14342267	14342964	698
132424_DHX2_DEL1228800	Chr12	17391948	17395096	7890655	7893805	3151
132424_FH838_DEL1224090	Chr12	17391948	17395095	8216557	8219699	3143
132424_II32_DEL1226480	Chr12	17391948	17395096	10947591	10950706	3116
132424_J4155S_DEL1213620	Chr12	17391948	17393220	27708010	27709279	1270
132424_Kosh_DEL1236910	Chr12	17391948	17395096	12495400	12498552	3153
132424_NamRoo_DEL1233480	Chr12	17391948	17394070	11218450	11220575	2126
132424_Tumba_DEL1226430	Chr12	17391948	17395096	9351174	9354323	3150
132424_Y3551_DEL1223860	Chr12	17391948	17395095	8104586	8107728	3143
132424_YX1_DEL1225360	Chr12	17391948	17395096	11543356	11546504	3149
132424_ZH11_DEL1237360	Chr12	17391948	17395096	12397210	12400363	3154

>132424_Tumba_DEL1226430
TGTCGCGTCCCAAAACGACTCTAAAATACATCCTCGAAATTATGCATAGAATAAGTAAAATCCATGAGAAAGCCTCCAACAATTAAAATGTGCTAAGTTAAAAGTCAAATAAGGCTTGGAGGATTTTTGTACATTTCCTAAAAGCCTAAAATGCGTAAATAAATTTTAGTGGAATTTTCAGAGCACAAATAATAATTAAGAAGAAATAAACAAAGTTAAAATGATTTTACAAAAAGAAAAACCCTAAAAAGTCTTTTTCCCCCCTTCCCCTCTTGGGCCGGCTCGGCCCACCTCCCTCCCTCTCTCTCCTCTCCCCCCCGGCCCATCCGGCCTCCTCCCCGCGCGTGCGTGCCGCTGACGGGCGGGCCCGCCCGCCACCCTCGCTGACGGGTGGGGCCCACCCGTCATCCCCTTCCTCCCGCCGCTCCCGCCGCCTCGCCCGTGCCCTAGCGCCGCCGCCGCCGCGAATCCCGCCGCTCCCGTCTGCCCCGCGTGCAATCAAGAGGGGGAATTACTCCCCGTGATTCCCTCCCTCTTTCCCCCCACTTTTCCCTCTCTCTCTCCCTCGGATTCGTTCGAAAACGTTTCCCCCTAAACCTCGCCGGCGCATCAATGGCGGCCGGATCTTCCGCGGCCGATTCCCCCTCATCCGGCCGCTCTCTCCCCCTCCCAACCCTATATAAACACTCCCCGTGCCTCCCTCCGCCGTTTCCGCCACTCGCCGCTCTCTCACTCCGCCGGAATCGAGCTCGCGCCGTCGCTCTCTCTCTCCGCCGTCGCCGCCGAGCTCCGGTCCGCCGCCGTCGTCGCCCCGGACCTTCTCCCGTTTCGGCGTCACCTCCTTCGGCTTCGCCGTAACCTCGCCGACCTCGTCCACCCCTCCGTTTCGCCCGCCGACCGCCGGAACGCCGCCGTCCCCGTCGACCCGAGCCGCGCCGCCGCCTTCCTCCGCTCCGGTCGCCGTTCCCGTCGTCGCCGTCGACCCGGGGTGAGCCGTGGACCGCCGTTTCGCTTCCCCCTTCCCTCCCCTCTCTCGGGCGCCGCTCCGCCGCGCCGGTGGTCGCCGGCGGCGACCATCGGGGCGCGGGTACGCCGCCTCCCGTCGGCTGTGCCGGCATGGCCGCCTTCGGGCGCGCCCCGCGGCTGCCATGTGGGGCCCGGCCGTCAGCCGCCCGCGCCCTCGGGTGCGGCTGACGCGTGGGACCCACGGCGCCGGCCGGCGTAAGCCGCGTGCACCCGGTCCACCGTGGACCGTGAGGCTGCCGCGTGGGCCCCACTCCCGTGGACCCGGTCCGCGCGCTCCTCCCCTCGGCTGACGCAATAAATCTGATTTTAAATTAAAATTTAAATGAAGAAATTCGCAAATATCCATTTAAAGAGCATATAAACTTCAAATGGCCATAACTTGGCCATTTGAACTCGGAATTGGACCGTTCAAGTCTCTAATTTTTCCTTAAGAAGTCAAGAACCCATTTTTGTGCTTTGTTTCTGCTTGTTATATGGAGTTTATTAGAGTATAAGCCTTTTCTTTTCCGTTGGTCGTGTAGACGCTGCAGCTTCGGAAGATCCGCTCTTTGTGGAGGTTGAAGCCGACGTTTGGGAAAGCGAGCAAGGCAAGTCACATCATCCTTGAACATATTGAATCCCAGTTTATAAAATTATGTTGATTCAAATTATTGCATTATCGCTTTATTTAAATTCCCGCGTTATCACTGTTTTATCTAGCCATGCCTATTTACCTTTGTTATGACCTTATTATTATTGTTATTGTTATTATTACCTTGTTCACCCTAGAATAAACAAAACCCCAACTAGTGGACACTCTACTCATGGTATCACTAGTATGATTTTAGGTAGATGCTTCGCTGTTTAATTAGGTAACATTAGGTGGTTTTTCAACTCTAGACTTTGGGAATATTCATATCACCTGGACACTATGGAATGGTTTGGTTATTGTGGAATTGGCTTCACACCGCTCCTTCTATTCAAAATCCCCAAAATGGTTTTAGGCTGGGCTCGGGGTGCATGGTTTTGATAGTAGCACCTCGGCCATATAAGGACCGGTCTTCGGGCCTCTGTTGCAAAGCACTACCGTACTTCCACATGTCTAGTGGGTAAGGCTTAGTTTGTGGCTCAGTCTAGTTATAAACAAAAGTACACGGATAGAGATGGAAGAAGTCGGGGGTCGATGGACATCTCTAGGACAAATGAAGGCTACACGAGCTGCGGCCCGGTAGTCGAGATGTCATGGCACAGGGCCGGTGTCCTGCTGCTAGGGGCTCAGTCCTGCCTGCCTGTCCCGGGGGTTCCGGCCGTAGGTGGGATTGGGTCGGTACTCTTGTCTATGGCTAGGATGGGTTGGAAACTATGTCACGTCTTCCGTCTGTATACCGTGGTGGTATGTGGCACGTGGTTACACGTGAGGAAGATGTGTCCTGTGGGTAAAGATGTACACCTCTGATCAGAGTATAACCTATTCGAATAGCCGCGCCCTCGGTTATGGGCAAGCCGAGCAATGTACCCAAGTTAGTGTTTTAATTCTTAAAACCTGCTTAACAACTAAAATGTGGAATGGTTGGCCTGGGTTGGCTTGGGACGAGCTGGGACCCAGGGTCGGGTTGCCAGTTCGGTCTGAATCATCGTAGGCCTTGGGTTAAGGCAGGTTCGTGTGGGTTCACGGCCTTGATAAATAATATTGTATAGTTCTAGGATCGTGTTTACAAAATAGCTTTGAGCAACTAAATATCTTTAAATGCTGTTTACTGCAACCCTAACCCTGTATAGTATAACTCCTTTGTACTCCCTTGCATTTATTCTGCACTTGTGGGTGTGTCTTGTTGAGTACGGTGGTTGTACTCAGTCTTGCTCAATTTTTCCCAAACCCAGAAGAGGAGTTCCTGGAAGATGAAGGCTTTGGTGTCTAGCTCGTGCCTGCCGTCAAGCGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTCTCGTTTGTCTTTGTGTGTGCTGGGCCTTCGCTGCCCATGTAATAAATTAACTATTTACGCTTCCGTTTGTTAAACTCTGAATTGTATCAACTTTTGGAGTACCTTGCCTCCTGGGACAAGGAATAATACACGCATGTAAGGAACGCCCGTTGGGTTATTTCCGGTCGTGACAA