Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 132424_IR64_DEL0432090

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-2A: GOBOL SAIL | Os132424RS1

Os XI-1B1: IR 64 | OsIR64RS1

Chr04

16178422

16179077

SV Length:

Query Start:

Query End:

Allele sv Count:

677 bp

27267310

27267986

3

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
132424_117534_DEL0431310	Chr04	16178422	16179077	26889743	26890419	677
132424_127652_DEL0434110	Chr04	16178422	16179077	27505264	27505940	677
132424_IR64_DEL0432090	Chr04	16178422	16179077	27267310	27267986	677

>132424_IR64_DEL0432090
ATAATCTTTGCACATGGTTTCAGATATAACTTTACGAAACATTAATGCATGCATATAGCATAGCATCAACAATTAGTTTGAAGAAAGTGCTTGGAGGTTTCACATTGGCGTACTGCCATTGCCAATAGTGGAGTAAATATTTTGTGACAGTTGAAATTTGAAGTACGCTGTGTTAGTAGTATAAGTAATATTTAGATATTAGAGCTTTTAGATGGAACATATGTTGGGAACTTCCGGTGGGCTACTTTTGATGTTAATTGATGCTCTATGTTCTTTCAAGTCATTGACACATGATATTGTAATGTTTCTTATGGTGTTATACACACCGGTCTATTATAAAGTAGTAATCCTATTATGACTTATGCACTACTATGAATTTGTAATCTTTCTAGTATATACCTGTCGAGAAGCTATTATATTCTATTATGAATTTGTAATCCTACTTTGGCTTGTTAAGAAGCTTTTATTGGGAGATAAGTTCAGATTGCTGAAGGAAACAGTCTTAACGAGCTTCTACGAATCGAGCTCGAGTCGAGCCGAGCCTTGATCGAGCTCGAACCGAGCCTACCTTCAAGCTCGAAGGTAATGCTGGGCTCGGCTCGAGCTCGGCTCGAGCCTGTACTGAGCTCGAGCTTAGGTAGGTAAGCTCGCTCGAGCTCAGCTCGTTGACAGCCCTA