Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 132278_IR64_INS1218670

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-subtrp: CHAO MEO | Os132278RS1

Os XI-1B1: IR 64 | OsIR64RS1

Chr12

9729194

SV Length:

Query Start:

Query End:

Allele sv Count:

404 bp

9034808

9035211

45

Gene_id	Chromosome	Start	End
OsIR64_12g0008760	Chr12	9031300	9039444

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
132278_02428_INS1209990	Chr12	9729194	9729194	9240232	9240635	404
132278_117425_INS1213430	Chr12	9729194	9729194	9277682	9278085	404
132278_125619_INS1216990	Chr12	9729194	9729194	9981843	9982246	404
132278_125827_INS1218910	Chr12	9729194	9729194	9128732	9129136	405
132278_127518_INS1217080	Chr12	9729194	9729194	9361990	9362393	404
132278_127564_INS1218160	Chr12	9729194	9729194	9068675	9069078	404
132278_127652_INS1216860	Chr12	9729194	9729194	9151849	9152252	404
132278_127742_INS1219300	Chr12	9729194	9729194	8984853	8985254	402
132278_128077_INS1210370	Chr12	9729194	9729194	9161570	9161973	404
132278_132424_INS1218450	Chr12	9729194	9729194	9107381	9107784	404
132278_Azucena_INS1206660	Chr12	9729194	9729194	9568287	9568690	404
132278_Basmati1_INS1213510	Chr12	9729194	9729194	9872466	9872869	404
132278_CN1_INS1218400	Chr12	9729194	9729194	9111331	9111734	404
132278_D62_INS1218010	Chr12	9729194	9729194	9219475	9219878	404
132278_DG_INS1217630	Chr12	9729194	9729194	9169195	9169598	404
132278_DHX2_INS1210070	Chr12	9729194	9729194	9227156	9227559	404
132278_FH838_INS1218070	Chr12	9729194	9729194	8924812	8925215	404
132278_FS32_INS1218990	Chr12	9729194	9729194	9145428	9145831	404
132278_G46_INS1217940	Chr12	9729194	9729194	9036367	9036770	404
132278_G630_INS1218620	Chr12	9729194	9729194	9048423	9048826	404
132278_G8_INS1218750	Chr12	9729194	9729194	9187979	9188382	404
132278_HZ_INS1218970	Chr12	9729194	9729194	9072218	9072621	404
132278_II32_INS1219020	Chr12	9729194	9729194	8970670	8971071	402
132278_IR64_INS1218670	Chr12	9729194	9729194	9034808	9035211	404
132278_J4155_INS1217980	Chr12	9729194	9729194	9310075	9310478	404
132278_J4155S_INS1218280	Chr12	9729194	9729194	9277581	9277984	404
132278_Kosh_INS1210080	Chr12	9729194	9729194	9197610	9198013	404
132278_KY131_INS1210290	Chr12	9729194	9729194	9088257	9088660	404
132278_Lemont_INS1206950	Chr12	9729194	9729194	9278289	9278692	404
132278_LK638S_INS1217920	Chr12	9729194	9729194	9030719	9031122	404
132278_Nipponbare_INS1210780	Chr12	9729194	9729194	9807832	9808235	404
132278_R498_INS1218210	Chr12	9729194	9729194	8670648	8671052	405
132278_R527_INS1218700	Chr12	9729194	9729194	8964127	8964530	404
132278_R9311_INS1218960	Chr12	9729194	9729194	9073626	9074027	402
132278_S548_INS1218180	Chr12	9729194	9729194	9192237	9192640	404
132278_TM_INS1217290	Chr12	9729194	9729194	9113684	9114087	404
132278_Tumba_INS1219760	Chr12	9729194	9729194	9377186	9377587	402
132278_WSSM_INS1218480	Chr12	9729194	9729194	9012707	9013110	404
132278_XL628S_INS1217930	Chr12	9729194	9729194	9022564	9022967	404
132278_Y3551_INS1218100	Chr12	9729194	9729194	8812678	8813081	404
132278_Y58S_INS1217740	Chr12	9729194	9729194	9271348	9271751	404
132278_ZH11_INS1210620	Chr12	9729194	9729194	9159177	9159580	404
132278_ZS97RS3_INS1217590	Chr12	9729194	9729194	8985618	8986021	404
132278_OglaRS2_INS1223020	Chr12	9729194	9729194	8570654	8571057	404
132278_MH63RS3_INS1218310	Chr12	9729194	9729194	8816712	8817115	404

>132278_IR64_INS1218670
CCTAGTGAGTATCATGGTTTTCAATTCTACAATCAGTATGCTAGAGAGAGAGGATTTAGGAAGGAGGTATATATGGACAGTTCTAACAGAACTAGGGAGCCACGGGCATTATCTCGCTGTGGTTGCAAAGCTCAATTTGAGATAAAACATGATGAGGAAAAAGGAAATTGGTATGTCGTTAGGTTTGAATCGAATCATAACCATCCGTTGTGTAAAGCTGATCAAGTGCCATTTTTGCGCTCACATCGTAGAATAACTCCTGCAGCACAGGCTAAGATGGTGGAATTGAGAGATGTTGGTTTGCATCAGCATCAAGTGATGGATATAATGGAGAGAGACCATGGTGGTTATGAGGCTACTGGTTTTACTTCCAGGGACATGTACAATTTTTTTGTGAAGCTGAA