Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 132278_IR64_DEL0438510

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-subtrp: CHAO MEO | Os132278RS1

Os XI-1B1: IR 64 | OsIR64RS1

Chr04

14174011

14174667

SV Length:

Query Start:

Query End:

Allele sv Count:

677 bp

27267310

27267986

12

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
132278_117534_DEL0438540	Chr04	14174011	14174667	26889743	26890419	677
132278_125619_DEL0437660	Chr04	14174011	14174667	28680135	28680801	667
132278_125827_DEL0438080	Chr04	14174011	14174667	29656920	29657596	677
132278_127652_DEL0439510	Chr04	14174011	14174667	27505264	27505940	677
132278_D62_DEL0438060	Chr04	14174011	14174667	28339612	28340288	677
132278_G8_DEL0438250	Chr04	14174011	14174667	28619001	28619677	677
132278_II32_DEL0438470	Chr04	14174011	14174667	28838381	28839057	677
132278_IR64_DEL0438510	Chr04	14174011	14174667	27267310	27267986	677
132278_R527_DEL0436510	Chr04	14174011	14174667	28382632	28383308	677
132278_S548_DEL0436050	Chr04	14174011	14174667	27863689	27864365	677
132278_YX1_DEL0437670	Chr04	14174011	14174667	27365367	27366043	677
132278_MH63RS3_DEL0437360	Chr04	14174011	14174667	29402780	29403456	677

>132278_IR64_DEL0438510
ATAATCTTTGCACATGGTTTCAGATATAACTTTACGAAACATTAATGCATGCATATAGCATAGCATCAACAATTAGTTTGAAGAAAGTGCTTGGAGGTTTCACATTGGCGTACTGCCATTGCCAATAGTGGAGTAAATATTTTGTGACAGTTGAAATTTGAAGTACGCTGTGTTAGTAGTATAAGTAATATTTAGATATTAGAGCTTTTAGATGGAACATATGTTGGGAACTTCCGGTGGGCTACTTTTGATGTTAATTGATGCTCTATGTTCTTTCAAGTCATTGACACATGATATTGTAATGTTTCTTATGGTGTTATACACACCGGTCTATTATAAAGTAGTAATCCTATTATGACTTATGCACTACTATGAATTTGTAATCTTTCTAGTATATACCTGTCGAGAAGCTATTATATTCTATTATGAATTTGTAATCCTACTTTGGCTTGTTAAGAAGCTTTTATTGGGAGATAAGTTCAGATTGCTGAAGGAAACAGTCTTAACGAGCTTCTACGAATCGAGCTCGAGTCGAGCCGAGCCTTGATCGAGCTCGAACCGAGCCTACCTTCAAGCTCGAAGGTAATGCTGGGCTCGGCTCGAGCTCGGCTCGAGCCTGTACTGAGCTCGAGCTTAGGTAGGTAAGCTCGCTCGAGCTCAGCTCGTTGACAGCCCTA