Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 132278_117534_DEL1116760

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-subtrp: CHAO MEO | Os132278RS1

Os cA1: N22 | OsN22RS2

Chr11

11847679

11850898

SV Length:

Query Start:

Query End:

Allele sv Count:

3234 bp

12620030

12623263

12 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
132278_117534_DEL1116760	Chr11	11847679	11850898	12620030	12623263	3234
132278_127742_DEL1122910	Chr11	11847679	11850898	13272325	13275558	3234
132278_G630_DEL1121710	Chr11	11847679	11850898	13530721	13533953	3233
132278_Nipponbare_DEL1106270	Chr11	11847679	11850898	12068946	12072167	3222
132278_R498_DEL1120970	Chr11	11847679	11850898	13023883	13027116	3234
132278_R527_DEL1122000	Chr11	11847679	11850898	13319121	13322354	3234
132278_R9311_DEL1123130	Chr11	11847679	11850890	18936831	18940053	3223
132278_S548_DEL1122180	Chr11	11847679	11850898	13225096	13228329	3234
132278_Tumba_DEL1120870	Chr11	11847679	11850898	13056274	13059504	3231
132278_YX1_DEL1121700	Chr11	11847679	11850898	12795054	12798286	3233
132278_ZH11_DEL1106700	Chr11	11847679	11850898	11886316	11889537	3222
132278_MH63RS3_DEL1123220	Chr11	11847679	11850898	13303886	13307119	3234

>132278_117534_DEL1116760
AACAACATGCTTAGAATCAGCACACAAAGAAATAGTAGAACTAACATGTTCATTCACTAGTTGTGGCATGGATATAAGTGAAACATTATCACACAACTCTTCTTTATCACAAGGAACAGCAAGTAAATCAACTTGTGACAAAGGCAACTCAGCAATTGATTCCACTAATGGTTGCTCTACTATAGCATGAAAAGTGGACAAGTGTAGCTCACCTTGAGAATACTCACCTTCATTTCTCTCAGCACCATTTAATTTACCTTGCGAACTTTCTTCAGATAATGTAGCTGCATCAGCCTTCTCCTCATTCGCGAGTGATGGAAGTGACATCTCAAACATATCGTTCTTCTCATTTTGGAGACTTTTCTGAACTTCCTGCAAAACATCAGTGATAGGAGGCACAAGCATATCTTGTTGCTCCGTTGGATTCTCCAAAGTTTTGCGCTCAACAATGCAAGCAAGCATGAACAATTGGCCTATATGATTATATGTCACATTAACAAGCCCAGCCTGAATATTGAAATTAAGCCCTCTGAAAAATCTAGTCATTGTGTTCTCATTCGATTCTTGTAAACCACTATAAGTGATACAAATTTTAAAATCATGAAAGTACTCCCTAACAGTTTTGTCACCTTGTTTTAGATGTTCCCATTTCTCAAGGAGAGCACGTCTATAGTATGAAAACACAAATCTTTTTCTCATCAGTATTTTGCATTCATCCCAAGTTTCAAGCTTATTCCCCACAGTATGCCACCAAAAAGATGCAGAACCGGTACACTTATTACTAGCAGCCTTAATCATTTGAGCATTAGAAAAATCATACTCATCAAATTGTTTTTCTACTGCTAGCTCCCAATTAATGTATGCAGCGGAATCATACTTTCCATCATAGACTGGTAACTTACATGCAACTTGTGCAAAATTATAGTCATGTACCTCATATGCATCACGTGAAGAAGTCGTCATATCTCGTCGAAGGTGTAGATGTTGACGTTGAGCATGACCATCTTGTTTCCCCTTGCGCAATCCTGCCATGGTTAGCAGCAAACAAGAAACATACACAAGAATATACACGCTCCTATCAACTACTAGGTAGTGGCAGCTCAAATCTCACACACACTCAAGCTTTTAACCAAGCTCTTACAAGATCTTACCAATGCAAGTGGAATGGTGATGTACACCGACTCAACCAAGCACCCCAATGGAGGTTGGATGTATCGATGCCTTGGCAAACACTTGCTGTACGGCTGCAATCAGATCTGTGGAGCTCTGGGTAGGCTTAAATATGTAGCAAAGGAATAGCAAATGCTCAAATCAGAGAACGCAAAGTTGAATAATTGTTCAAAGTCAAGTACCGTGCTGGTCCTAGGCTAGAACGTACTAGAGACGCGAGCCTAGACACAAACGGTACCACAAAATAGCACCAGAAACAACTCAAGCACACTCTGATGTATGAAAGCAAACTCAAAGATACAACTAATTTTTCCTTTTGCTTCTTTCTTTCCTTTTCTTTCTTTTCTATTTTCTTTTCTTTTTCTTTTCTCTTTTTTTTTCTTGGTGCGGCTTTTCTTCTCTTTTTTTTATGCACCTTTCTGCCTTTTTTTTTCTTTCTTTTTTTTATTTTTTTTACCAAAAACTGACTCAAGGACCTTAATGTAAGGTTACAGGGACTCAAACGTAAATATAAAATTTACAGGGACTCAAATGTAAAAGTCTAAACCCAAAATTAAAATTATACAAAAAAAATGGAATGCTGAATATATGCTGATTCCGTTTTTCCAAACAGATCTCGAAACCGACACCAAACAAAAATTCGCCAAGGTGTTTGACACAACTCGGAACCGTGGAAGAGAGGGAGGGAGTCGGACTCGACCAAAGGGGCGAGTGGGACTCGGCCAGGAGGTGGAGTGGATGGCAGCCGAATTTGGTGTATGGGATAAAAAGGAAACTGAATTTTAACCAATCCAATCTACTATATCTTTCCAAAACAAACTTGACTACTTCCAAAATCAGATATGGTAATTCACCTTCCTCCTCTCGTGCACGACACAGGCACGGCCAAAAAAAACACACACAAGGATCGGCAAACTCTAGATGCAACTCAAGAACTCCAAAACTAACCGACAGAAACTTCTGAAAACTACAAAAATAGAACCGTGGCAGCGAGCCAATTCCGTTTTTGTAGGTCCCGACAACAACAGAGACACGGTGGCAGCGACGACTGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAGCTAGACGCTAAGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAATATGGCTAGGTAAATGATACGAATTTTTTTGTATGGCTATTTTCTGGTTATAGGAAGATAAAAACTCACCGAGCAACGAAAGCTCTGATACCACCTGATGAACCCTGAGTTCCTCCCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACAATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGCAATCTGATATTGCAAATAGGAATTTAATACGAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGTGACGCAGCACCTTGCTTCTGTGATTGCGGCCAAACAAGATAGAATTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCGCAAAACGGAGCACGTATGTAGATTTTGCGACCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAAGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCA