Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 128077_ZS97RS3_INS1246260

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-trop2: KETAN NANGKA | Os128077RS1

Os XI-1A: Zhenshan 97 | ZS97RS3

Chr12

23693925

23696107

SV Length:

Query Start:

Query End:

Allele sv Count:

1400 bp

5577089

5578488

40

Gene_id	Chromosome	Start	End
OsZS97_12G0094600	Chr12	5577163	5578724

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
128077_117425_INS1231050	Chr12	23693925	23696107	5738198	5740376	2179
128077_125619_INS1245750	Chr12	23693925	23696107	5667964	5670140	2177
128077_125827_INS1244330	Chr12	23693925	23696107	5610858	5613040	2183
128077_127518_INS1244230	Chr12	23693925	23696107	5749133	5751313	2181
128077_127564_INS1244400	Chr12	23693925	23696107	5683749	5685929	2181
128077_127652_INS1241300	Chr12	23693925	23696025	5710019	5712117	2099
128077_127742_INS1247010	Chr12	23693925	23696107	5642314	5644494	2181
128077_127742_INS1247010_1	Chr12	23693925	23696107	11513223	11515403	2181
128077_132424_INS1244820	Chr12	23693925	23696107	5605229	5607409	2181
128077_Basmati1_INS1237990	Chr12	23693925	23696107	5734197	5736375	2179
128077_D62_INS1243270	Chr12	23693925	23696107	5710260	5712440	2181
128077_FH838_INS1232950	Chr12	23693925	23696107	5554857	5556256	1400
128077_FS32_INS1244600	Chr12	23693925	23696107	5635430	5637610	2181
128077_G630_INS1232880	Chr12	23693925	23696107	5645805	5647985	2181
128077_G8_INS1247270	Chr12	23693925	23696096	5624440	5626607	2168
128077_HZ_INS1244650	Chr12	23693925	23696107	5628043	5630223	2181
128077_II32_INS1247010	Chr12	23693925	23696107	5631486	5633666	2181
128077_II32_INS1247010_1	Chr12	23693925	23696107	11495855	11498036	2182
128077_IR64_INS1246540	Chr12	23693925	23696107	5603510	5605690	2181
128077_J4155_INS1242120	Chr12	23693925	23696107	5774513	5776693	2181
128077_J4155S_INS1242720	Chr12	23693925	23696107	5775369	5777549	2181
128077_LK638S_INS1246980	Chr12	23693925	23696107	5607717	5609116	1400
128077_Nipponbare_INS1233400	Chr12	23693925	23696107	6119847	6121246	1400
128077_R498_INS1245950	Chr12	23693925	23696107	5569816	5571215	1400
128077_R498_INS1245950_1	Chr12	23693925	23696107	11145430	11147610	2181
128077_R527_INS1245010	Chr12	23693925	23696107	5576532	5578712	2181
128077_R9311_INS1248110	Chr12	23693925	23696107	5732494	5734674	2181
128077_R9311_INS1248110_1	Chr12	23693925	23696107	11601324	11603504	2181
128077_S548_INS1244940	Chr12	23693925	23696107	5575918	5578098	2181
128077_TM_INS1244550	Chr12	23693925	23696107	5605018	5607198	2181
128077_Tumba_INS1248490	Chr12	23693925	23696107	5594870	5597047	2178
128077_Tumba_INS1248490_1	Chr12	23693925	23696107	11921050	11923230	2181
128077_WSSM_INS1243850	Chr12	23693925	23696025	5587732	5589830	2099
128077_XL628S_INS1247470	Chr12	23693925	23696107	5599773	5601172	1400
128077_Y3551_INS1233420	Chr12	23693925	23696107	5555180	5556579	1400
128077_Y58S_INS1237900	Chr12	23693925	23696107	5769961	5772141	2181
128077_YX1_INS1251310	Chr12	23693925	23696107	6266356	6268536	2181
128077_YX1_INS1251310_1	Chr12	23693925	23696107	12087793	12089973	2181
128077_ZS97RS3_INS1246260	Chr12	23693925	23696107	5577089	5578488	1400
128077_MH63RS3_INS1233690	Chr12	23693925	23696107	5558422	5559821	1400

>128077_ZS97RS3_INS1246260
CTGTAACGCCCCAGGTAACCACGTAGCTAGAGTGCCACATCAAACATACACTCAAACCACTAACTCCCAAAATTATTAGAAATTTCGGCAGAGTCTCCCCTGTAAATACGGACATCCACGACAGGCAATTATAAGTTAAACTAATAACAGTATCATTCCCACAATACGATCCATCCTTATAATCCATGGGGAAGAAACTATTAGAAATCTAAAAGATTATTACAAGACCGAACCATGATATAATTTAAGTATCATTATGGACCTAAGCAATATAGTTTGATAGTGTGCAGATAAATGTGTATATAAGGGTGCTACTTCCCGCCCATGCATGTCGATCTCAATATGTACCTAAAACCAAATAAAACACAAGAGTGAGTATAAAAATACTCAGCAAGTACAATATGGAACTAGAAAACATATATACACACCATTGGCAATAAAGTATAAACAGAAGGCTTTCTTTCTTTGATAGGAAACATATTTTCAAACACCAAGTCAAAGAAGATAGTAGTTCCCATCCGGGGGAGGCATGAATTGAAATAGTAGTTTCCATCCCAGACAATAGTGAATACATCCTAGCATTTGCCGGCAAAGCCGAGTAAGCGTGATCAGCGCTTACCCACAGGAACTTGAATAAAGAACCAAATTGCATTCCCATGACTACGCATGGTACTTTCATTGAAACCAGAATCAAAGAACCAAATTGAAACCATATTGCACATTTATGGCAAACAAGGAACTTGAATTATTTACCCAGAACAAGAATCCGGAATATTGAAAGAAGAATAACATCGTAAACATAGGATAAATATGGAAACCTAAATGGCGCGAACAACAATATGAATATAAGCGGTCACATGTCACATAGAAATATATCGGAAATAAATAGATAGAGCAAACAATCCATCAATCACACACTTAGTTCATCATGCACTTGCCTCCAATGAAGGTTTGGTATCATGCACGATCTGAAGGACCACCACCTAGGGTTTCTTTAGAGAACTTGTGAGGAGACAATAGGGGAGACTCTGATCTAACCCCTCCTTTTACTCCTCTCCTCCTCCTCGTTCCGTTTTTCTATTTCGCTTTTCGATCCAAGCTATGAAGGTGGAGATCTAGGGAGGGCAATTTGTTGTAGAGAGGAGAGATGTGAACATAGGAGAAGGGGAGGAAGGAGGCGCCGGCCAGGGAGAGGGGTGGCGGCACTATGAGGGGAGGTGGGAGTCGGTTCCCCTCTCTCTTGGTTTTAGGGAGAACTAATGGGCTGGATTTATGGGCCTTCTCATGTTGGCCCACTTCTAAAGATATTTTTCTTTTATTTATTTGTGTTAACATCTTTATTTTAACAAGTCAACCCAAATTAAAAAAACTAAATATCTTTTAATATACGGGGTATTACA