Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 128077_Nipponbare_DEL1111170

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-trop2: KETAN NANGKA | Os128077RS1

Os GJ-temp: Nipponbare | IRGSP 1.0

Chr11

12183716

12186469

SV Length:

Query Start:

Query End:

Allele sv Count:

2753 bp

12070601

12073353

10 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
128077_G630_DEL1121960	Chr11	12183716	12186470	13529536	13532300	2765
128077_KY131_DEL1111020	Chr11	12183716	12186469	12066989	12069741	2753
128077_LJ_DEL1110680	Chr11	12183716	12186469	11849612	11852363	2752
128077_NamRoo_DEL1110370	Chr11	12183716	12186469	11701457	11704209	2753
128077_Nipponbare_DEL1111170	Chr11	12183716	12186469	12070601	12073353	2753
128077_R498_DEL1121790	Chr11	12183716	12186470	13022698	13025462	2765
128077_R527_DEL1122350	Chr11	12183716	12186470	13317936	13320700	2765
128077_R9311_DEL1123080	Chr11	12183716	12186470	13201198	13203955	2758
128077_S548_DEL1122870	Chr11	12183716	12186470	13223911	13226675	2765
128077_MH63RS3_DEL1122790	Chr11	12183716	12186470	13302701	13305465	2765

>128077_Nipponbare_DEL1111170
AAAAAAAAGAAAAAAAATCCGCACCAAAAAAAATCAGAAAAGAAAAGGAAAAAAAAGAAAAGAAGAAATTAGAAAGAAAGAAAAGAGAAAATATTGTTTTGTTTGAGCTGAACTTCATACATCAGAGTGTGCTTGAGTTGTTTCTGGTGCTATTTTGTGGTACCGTTTGTGTCTAGGCTCGCGTCTCTAGTACGTTCTAGCCTAGGACCAGCACGGTACTTGACTTTGAACAATTATTCAACTTTGCGTTCTCTGATTTGAGCATTTGCTATTCCTTTGCTACATATTTAAGCCTACCCAGAGCTCCACAGATTTGATTGCAGCCGTACAGCAAGTGTTTGCCGAGGCATCGATATATCCAACCTCTATTGGGGTGCTTGGTTGAGTCGGTGTACATCACCATTCCACTTGCATTGGTAATATCTTGTAAGAGCTTGGTTAAAAGCTTGAGTGTGTGTGAGATTTGAGCTGCCAGTACCTAGTAGTTGATAGGAGCGTGTATATTCTTGTGTATGTTTCTTGTTTGCTGCTAACCATGGCAGGATTGCGCAAGGGGAAACAAGATGGTCATGCTCAACGTCAACATCTACACCTTCGACGAGATATGACGACTTCTTCACGTGATGCATATGAGGTACATGACTATAATTTTGCACAAGTTGCATGTAAGTTACCAGTCTATGATGGAAAGTATGATTCCGCTGCATACATTAATTGGGAGCTAGCAGTAAAAAAACAATTTGATGAGTATGATTTTTCTAATGCTCAAATGATTAAGGCTGCTAGTAATAAGTGTACCGGTTCTGCATCTTTTTGGTGGCATACTGTGGGGAATAAGCTTGAAACTTGGGATGAATGCAAAATACTGATGAGAAAAAGATTTGTGTTTTCATACTATAGACGTGCTCTCCTTGAGAAATGGGAACATCTAAAACAAGGTGACAAAACTGTTAGGGAGTACTTTCATGATTTTAAAATTTGTATCACTTATAGTGGTTTACAAGAATCTAATGAGAACACAATGACTAGATTTTTCAGAGGGCTTAATTTCAATATTCAGGCTGGGCTTGTTAATGTGACATATAATCATATAGGCCAATTGTTCATGCTTGCTTGCATTGTTGAGCGCAAAATTTTGGAGAATCCAATGGAGCAACAAGATATGCTTGTGCCTCCTATCACTGATGTTTTGCAGGAAGTTCAGAAAAGTCTCCAAAATGAGAAGAACGATATGTTTGAGATGTCACTTCCATCACTCGCGAATGAGGAGAAGGCTGATGCAGCTACATTATCTGAAGAAAGTTCGCAAGGTAAATTAAATGGTGCTGAGAGAAATGAAGGTGAGTATTCTCAAGGTGAGCTACACTTGTCCACTTTTCATGCTATAGTAGAGCAACCATTAGTGGAATCAATTACTGAGTTGCCTTTGTCACAAGTTGATTTACTTGCTGTTCCTTGTGATAAAGAAGAGTTGTGTGATAATGTTTCACTTATATCCATGCCACAACTAGTGAATGAACATGTTAGTTCTACTATTTCTTTGTGTGCTGATTCTAAGCATGTTGTTCACATTGCTAATGAAGTAGAGGAACGCGAATTGCTATCTTCTTTAAATACTTTGGGCTATGTTCAGTTTGATGATTTTTGTGAGCTCGATAATTTGAAGGAGAAATTATTTGCTAAATCTGATTTGCCATGTCCAACTAATGCTATTTTTCATATCTTTGGCGAATATAATGATAGAGGAATATTTTTGGTGCATAGAGTTTACATTTGTTCAGATATAGAACATCTTGTAGTTCCGGATAAAATATGCAAGCTAGAGAGACATGTTACTGCTAATCATATTGTCTCGAGTTTGTCTTGTTTTGATTGCAAGAAACAGGTTGTTTTCAGTGGACTGCGCGAAGAGCACCATATGGAAAAACCGAGGACGGTTTTCTGTGAAGAAGGGGAGGATGATGTGACCATGGCTACTATGGATACGACCATTGCTCACATCATGAATCAACAAGAAGACATCAAGATCAAGTCCTCCATGTGCTGCAATCTGATTCGGCCACGTGTTACATTGCTGACTTCAAACGGCCGCCAAATCTACATACGTGCTCCGTTTTGGGCCCGTGAGTACTTGATGGAAAGCTCTCGAAGTCCTCCTTCCAACGGATCCAGCCTCATCTCGGAAATCTATCTCGTTTGGCCGCAATCACAAAAGCAAGGTGCTGCGTCTCCTGTATTGGGCCAATGGGCTTGTAACTTTGTTTGGGACCCTGGCCCATGTGGGGCCCATGTGGGGTGCGCCCCAATCTGGTGGAGCACGACCCTTGGACCCTCTTAGTCGTCCTCCCACCTCTATAAATAGTTAGGTACCCCTTCAGGGTTTCTTGGGTTTTTGTTAGATTAAAGTTTAGCCATTGCTACTTGCTTGCAGCGCGCGTGTCGGCTAGACCGTCCGTCTGCTTGTTCTTCGGAACCCCAACTTATCATTTGTATTAAATTCCTATTTGCAATATCAGATTGCTTTATTCTTGTTCTTGCTTGTTTCTTCGATTTGCTTGCAGGAATAGGGTTGATCTGCACCGGCAAGATCAACAACCTACGGAGAGGTGTATCGATCGCTAAGGCGCAACACAACGTCTCGTACGGTTGTAGTCGGATCGTCAACGTTTCTCCCAAATCGTAGTTATCACAACTCACCGAAAGATCGGGCCAACAACAGCCTTGAGTGTTGAGAGGAACTCAGGGTTCATCAT