Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 128077_IR64_DEL0429230

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-trop2: KETAN NANGKA | Os128077RS1

Os XI-1B1: IR 64 | OsIR64RS1

Chr04

13146677

13147333

SV Length:

Query Start:

Query End:

Allele sv Count:

677 bp

27267310

27267986

21

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
128077_117534_DEL0430150	Chr04	13146677	13147333	26889743	26890419	677
128077_125619_DEL0431490	Chr04	13146677	13147333	28680135	28680801	667
128077_125827_DEL0430280	Chr04	13146677	13147333	29656920	29657596	677
128077_127652_DEL0433790	Chr04	13146677	13147333	27505264	27505940	677
128077_127742_DEL0431020	Chr04	13146677	13147333	28909787	28910463	677
128077_D62_DEL0431440	Chr04	13146677	13147333	28339612	28340288	677
128077_G8_DEL0430520	Chr04	13146677	13147333	28619001	28619677	677
128077_HZ_DEL0430280	Chr04	13146677	13147333	29081454	29082130	677
128077_II32_DEL0430630	Chr04	13146677	13147333	28838381	28839057	677
128077_IR64_DEL0429230	Chr04	13146677	13147333	27267310	27267986	677
128077_LK638S_DEL0432030	Chr04	13146677	13147333	28836647	28837323	677
128077_R498_DEL0432650	Chr04	13146677	13147333	27801971	27802647	677
128077_R527_DEL0432570	Chr04	13146677	13147333	28382632	28383308	677
128077_R9311_DEL0431510	Chr04	13146677	13147333	28990540	28991216	677
128077_S548_DEL0432650	Chr04	13146677	13147333	27863689	27864365	677
128077_TM_DEL0430560	Chr04	13146677	13147333	27028326	27029002	677
128077_WSSM_DEL0431260	Chr04	13146677	13147333	28470709	28471385	677
128077_XL628S_DEL0431450	Chr04	13146677	13147333	28963775	28964451	677
128077_YX1_DEL0430110	Chr04	13146677	13147333	27365367	27366043	677
128077_ZS97RS3_DEL0430370	Chr04	13146677	13147333	29177720	29178396	677
128077_MH63RS3_DEL0432550	Chr04	13146677	13147333	29402780	29403456	677

>128077_IR64_DEL0429230
ATAATCTTTGCACATGGTTTCAGATATAACTTTACGAAACATTAATGCATGCATATAGCATAGCATCAACAATTAGTTTGAAGAAAGTGCTTGGAGGTTTCACATTGGCGTACTGCCATTGCCAATAGTGGAGTAAATATTTTGTGACAGTTGAAATTTGAAGTACGCTGTGTTAGTAGTATAAGTAATATTTAGATATTAGAGCTTTTAGATGGAACATATGTTGGGAACTTCCGGTGGGCTACTTTTGATGTTAATTGATGCTCTATGTTCTTTCAAGTCATTGACACATGATATTGTAATGTTTCTTATGGTGTTATACACACCGGTCTATTATAAAGTAGTAATCCTATTATGACTTATGCACTACTATGAATTTGTAATCTTTCTAGTATATACCTGTCGAGAAGCTATTATATTCTATTATGAATTTGTAATCCTACTTTGGCTTGTTAAGAAGCTTTTATTGGGAGATAAGTTCAGATTGCTGAAGGAAACAGTCTTAACGAGCTTCTACGAATCGAGCTCGAGTCGAGCCGAGCCTTGATCGAGCTCGAACCGAGCCTACCTTCAAGCTCGAAGGTAATGCTGGGCTCGGCTCGAGCTCGGCTCGAGCCTGTACTGAGCTCGAGCTTAGGTAGGTAAGCTCGCTCGAGCTCAGCTCGTTGACAGCCCTA