Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 128077_127564_INS0443510

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-trop2: KETAN NANGKA | Os128077RS1

Os XI-3A: LIMA | Os127564RS1

Chr04

22051682

22055161

SV Length:

Query Start:

Query End:

Allele sv Count:

3491 bp

29157443

29160933

10

Gene_id	Chromosome	Start	End
OsLima_04g0022000	Chr04	29152874	29161903

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
128077_125827_INS0439140	Chr04	22051682	22055161	29658279	29661768	3490
128077_127564_INS0443510	Chr04	22051682	22055161	29157443	29160933	3491
128077_CN1_INS0440620	Chr04	22051682	22055161	28308416	28311905	3490
128077_D62_INS0441070	Chr04	22051682	22055161	28340973	28344462	3490
128077_DG_INS0441620	Chr04	22051682	22055161	28727850	28731339	3490
128077_FS32_INS0439540	Chr04	22051682	22055161	28420655	28424144	3490
128077_G46_INS0437810	Chr04	22051682	22055161	27887329	27890818	3490
128077_TM_INS0439510	Chr04	22051682	22055161	27029685	27033174	3490
128077_ZS97RS3_INS0438530	Chr04	22051682	22055161	29179079	29182568	3490
128077_MH63RS3_INS0442490	Chr04	22051682	22055161	29404139	29407628	3490

>128077_127564_INS0443510
CCCCGCGCGCCGTTGTTCGCGCGCGCGCccgcgtggttgccacccgtgccgcgccgcctgcgccgtccgcgtcacccggccccgttgccctgccgcgcctgcagccgcttggccccgcagccagcgcgcgtgcccgagccgagccactcaatccgccgcgcctcccgttgcaagccgcgcgcgagagccgtggtggccgaccgcctggtcgccaccatcgtcagcgcctgcccgcgcctgtcgcccgtgtcaccgcctcgccgtcatcaccgtcgtcatcgcctcggccccgccactccgcgcgcaagccgccaagggacggaggcagagcccctcctccctctaccacgtcgcccccgctcccctcctccttttcccaaagaggcaaggggcgagccccctttctctccctcattttcccctttttccccccgccggcgtcatcctccctccgtcctgtcgccgatttggccgcgagcgccgagcgccagctcgcgccttgaccgcccaaagtcggtttccaaaccgacattgccgccctttaaacccaggcgccctcccttcctctttCcccccaatcctccccgtttctcgtccgcgccattgccgccacctcctgtgctctgtctcgcctccgccgttcatcgccaagcaccgggagagccggtgcgttcgttgacgcggaaggggactccgggcgctcgtcttcctcctcttccccggcccgaggccggagagatcactcccgcgccgtcggcctctcgtcacagcgccccgcctcatctcggtagtgcctccctccgttcttcctcctcgttccatcttCcccccCTTAGTTTTCGGTAGTAGCACGAGTAGCCTCCCCGTAGCTAGCCGGCGCCGCCCCGACCATTGCCGCTGCTCGCCGTGTGCCCGCCACCGTCGCCGCCCGTGCTTCGTAGCACCCGCTCGTCGCCGGCCTCGCTCGGCGTAGCTCCGCCTAATCTGACGCTAGCAACGAATTCCCGTAGCCGCGTAGATGCTCTCACCGCCGGGAATTGGCCCCTCGTGACCTCGTCGCCGTTTCCCCCTTTTCCCTCCGCCGGGCGCCGCTGCCGCAATCCGCCGCCGACGGACTCCCTCCGGCGAATCCAAGCCGTTGGCTCGCTCCCTCTCATTCTCCCTCGTCATCCCGGTGTACGCCCCGTCGCCCCTCATCGTCGCAAGGCGTCCCGGAGAAACCACCGCCGCCCGCCGTCCATTCGCGGCCGGCACCTTCGTCTTCCTCCCGCCAGCCCGCGTGGCAGCCACGTAGGCGCCACGTCGGCGCCAGCTCGGCCGAGATCGGATCGGGCCGACCCCGGTCAGCCCCTCCCGTGCGCGCGTTCCACCGCGAGCCGTGAGGCTACGTGTGGGCCCACCGCATCCGTTCCACCGCGAACCACGCGCGTGCACCGCATCCCTTCCCCGCCCGTGCGCGTGCGCCGCGTGCTCGCTCAGCACGGTGAACCGTGTCACCGACAAGCGGGTCCTACCCGGGACCACGCGTGGTGAGCCCGGTCCACCGGCCCTccctctcctccccttccgcgcgcgcgcttgggctgccttgggccggtcggcccatttagctcggccggaccgctccgtttctctcgggccgcgccctagccgcccgaggaaaagtatattatccctccctcttttcttttctttttcaaaaaggatttaattaaatccttttcctttagaccaaaaatccaataatcttagaaattcaatatcttcccaaccgtaaatccgtttgactccgttccacttccaaaattcctcaaatctcgagatctatctaatggcacgcttagaggtcattaatagggctttattttcgccgtttgttgagttgtcccgtttcgcgtgtagtttcggagcccgaagacccgcagtgcgaggattttgaggatcaagctccagatttcgagcaaggcaagccacctttgaacatcttgagcctatatttgaatttaattatattgcttgaaaaatattatgcattgataggatcgcacttaatctgtttgtcccgtctgcaaggcagattggcggacctacctagtttgttgcatttgatccttcctttgttaattgttataccatgttcccttgtaaccacccagttgcgcctcgggaatcgtgcactctgtgcgagtaccgacggtcgccttcaaacttcaaatctgagtaacaacttgggttttacaaaagacttggaaaacccgacacctgggtcggtgcttgcgaactaaatgaatttccaaaaccgcggaccggggaacgtaccgggtgtacggttttcccgctcttgcacctaaggaccgtttccttagaatttcatccaaacataagacaagtacgaccacatgggtggaatgggacacccctggctgagtaactagcttatcaggggagccttgatgccgagagacatgtggattcgccggggtggtgtcggggaggacccctgggcttcctggcacagtatggtctgggacctaacctgttgttggtctgggacccctctcgtcggcatatggtaaacctgtgtcggctttggaaatgccttgtcatgaaagcttggaggtctcccgacgtggctgatccccacgggctgggtgatccgggttagtaatgtcgtgtgggtaaagtgtatcccctctgcagaggttaacaaactgttcgaacagccgtgcccacggtcatgggcggatgtgaggtgattcctagcgtagttttgtttgactactgcttgtgaaattgctgttgtggaaaggggttcgatgtttgaaaaatctgcagctgatgggatcagctaggcccgggtggccgtttgaaagttgttggcccgggtggccgtttgaaaagctgttggccgggtgccaaccttgattcaattctaaagactgatacattgcacatactccgaccggacaagacgcactgtcttatccgtgtcgtttgagaagcactcacttagttGttttcagaaaggagttcaaataaaatcaattgtaaaaacaacagacttttcttgaagcctgcattaaacacttatttcccatggcttgctgagtactcccgtactcacccttgctctatataaataatccccccagttgctgaagaagatgaagcggatcctgctgatgaggagttcttccaagagcaagccggctacgatgagtattagggtttcggcctagttcccaagtcgcgcctgtgttgtttggtccaagtcctggcttccgtttcccttttgtaatgcagttgtgagctcGggatctgtccgcagcccaacatgactgtacctctactctataataaagagacctctgttgctgtgataatccgtcttcctatgataacaacactattttctgggactggtatcgattaacaggttaatttggagcgtcacgggctagtttcggtcggtactagtccggggcgtgaca