Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 128077_127518_TRA0402640

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

TRA

Os GJ-trop2: KETAN NANGKA | Os128077RS1

Os XI-3B1: KHAO YAI GUANG | Os127518RS1

Chr04

1185715

1186027

SV Length:

Query Start:

Query End:

Allele sv Count:

317 bp

28880930

28881246

11

Gene_id	Chromosome	Start	End
OsKYG_04g0021830	Chr04	28876755	28885779

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
128077_125827_TRA0401670	Chr04	1185715	1186027	29657890	29658206	317
128077_127518_TRA0402640	Chr04	1185715	1186027	28880930	28881246	317
128077_FH838_TRA0401840	Chr04	1185715	1186027	28797191	28797507	317
128077_FS32_TRA0402190	Chr04	1185715	1186027	28420266	28420582	317
128077_G46_TRA0402340	Chr04	1185715	1186027	27886940	27887256	317
128077_G630_TRA0402360	Chr04	1185715	1186027	28922502	28922818	317
128077_LK638S_TRA0402440	Chr04	1185715	1186027	28837617	28837933	317
128077_TM_TRA0401590	Chr04	1185715	1186027	27029296	27029612	317
128077_Tumba_TRA0402270	Chr04	1185715	1186027	29350371	29350687	317
128077_Y3551_TRA0402400	Chr04	1185715	1186027	29144065	29144381	317
128077_MH63RS3_TRA0402240	Chr04	1185715	1186027	29403750	29404066	317

>128077_127518_TRA0402640
TGTAGCGCCCGTTCCGTCGTGGCGCCTAGTGGGAAAATTATCTCTTAAAAACCCTAATTGCGAAATTTGTTTCTTTGCTTGTTGTCTAGTGTCCATGCCATCTGAAGATCTCAAATCCCCGATATATCGTCGAGTTCAATTCCGAATCTAAATCCTTCCAAATCAAATCCCTCCGCAAAAGTCTATTTTGCCTCCCCCGGGGTCGATGGGCCGAATCTCTTTCGGCCCATCTCCCCCTCCCTCCCGGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTTCCCCTCGCTCTGCCCGCGCGTGCGCGAGCGC