Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127742_117425_OTH1208990

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os XI-1B2: PR 106 | Os127742RS1

Os cB: ARC 10497 | Os117425RS1

Chr12

5773979

5776096

SV Length:

Query Start:

Query End:

Allele sv Count:

529 bp

6103244

6103772

5 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127742_117425_OTH1208990	Chr12	5773979	5776096	6103244	6103772	529
127742_FH838_OTH1203290	Chr12	5773979	5773983	5550428	5550056	373
127742_R498_OTH1202940	Chr12	5773979	5773983	5565387	5565015	373
127742_Y3551_OTH1203370	Chr12	5773979	5773983	5550751	5550379	373
127742_MH63RS3_OTH1203370	Chr12	5773979	5773983	5553993	5553621	373

>127742_117425_OTH1208990
CTTGCAATGGAAGGCAAAAAATGGTGTTAATGACAAGGCATTTGGCGATTTATTGAAACTCGTCAAGAACATTCTTCCGGAGGGAAACAAATTGCCCGAGACAACGTACGACGCTAAGAAGATAGTCTGCCCTCTAGGACTGGAAGTTCGGAAGATTCACGCATATCCGAATGATTGTATCCTATATCACGGTGAGGAGTACGAGAACCTAGAAGCATGCGCTGTTTGTAAAGCACTACGATACAAGATTAGACGAGATGATCCAGGTGAGGTTGATGTGCAGCTAACGAAGAAGAGAATTCCTGCTAAGGTGATGTGGTATTTCCCTATAATACCACAGCTAAGGCATTTGTTCAGGAACAAGGGGAATGCTAGAATGATGCGTTCGCACGCTGAAGAACGTCAACAGGACGGGATGCTGAGACACCCCGCAGATGGTTCGCAGTGGCGAAACATCGACAGAAAATTTAAAGACTTTGGAAAGGACGCACGAAACATACGGTTTGGTTTAAGTACGGATGGCATGAAT