Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127652_ZS97RS3_DEL1125650

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cA2: NATEL BORO | Os127652RS1

Os XI-1A: Zhenshan 97 | ZS97RS3

Chr11

12905086

12908068

SV Length:

Query Start:

Query End:

Allele sv Count:

3028 bp

13961566

13964593

11

Gene_id	Chromosome	Start	End
OsZS97_11G0189800	Chr11	13952926	13965195

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127652_132424_DEL1123770	Chr11	12905086	12908064	18115576	18118600	3025
127652_CN1_DEL1122990	Chr11	12905086	12908068	14918229	14921257	3029
127652_G46_DEL1123160	Chr11	12905086	12908068	14026242	14029268	3027
127652_G8_DEL1124390	Chr11	12905086	12908068	13388898	13391924	3027
127652_HZ_DEL1128420	Chr11	12905086	12908068	13959047	13962075	3029
127652_J4155S_DEL1128830	Chr11	12905086	12908068	13979472	13982500	3029
127652_LK638S_DEL1127150	Chr11	12905086	12908068	14011507	14014535	3029
127652_WSSM_DEL1120330	Chr11	12905086	12908068	13350870	13353898	3029
127652_XL628S_DEL1129120	Chr11	12905086	12908068	14005581	14008609	3029
127652_ZS97RS3_DEL1125650	Chr11	12905086	12908068	13961566	13964593	3028
127652_MH63RS3_DEL1126300	Chr11	12905086	12908063	13302702	13305724	3023

>127652_ZS97RS3_DEL1125650
GTTCTGAGTTGTGTCAAACACCTTGGCGAATTTTTGTTTGGTGTCGGTTTCGAGATCTGTTTGGAAAAACGGAATCAGCATATATTCAGCATTCCATTTTTTTGTATAATTTTAATTTTGGGTTTAGAATTTTACATTTGAGTCCTTGTAAATTTTATATTTACGTTTGAGTCCCTGTAACCTTACATTAAGGTCCTTGAGTCAGTTTTTGGTAAAAAAAAATAAAAAAAAAGAAAGAAAAAAAAGGCAGAAAGGTGCATAAAAAAAAGAGAAGAAAAGCCGCACCAAGAAAAAAAAAGAGAAAAGAAAAAGAAAAGAAAATAGAAAAGAAAGAAAAGGAAAGAAAGAAGTAAAAGGAAAAATTAGTTGTATCTTTGAGTTTGCTTTCATACATCAGAGTGTGCTTGAGTTGTTTCTGGTGCTATTTTGTGGTACCGTTTGTGTCTAGGCTCGCGTCTCTAGTACGTTCTAGCCTAGGACCAGCACGGTACTTGACTTTGAACAATTATTCAACTTTGCGTTCTCTGATTTGAGCATTTGCTATTCCTTTGCTACATATTTAAGCCTACCCAGAGCTCCACATATCTGATTGCAGCCGTACAGCAAGTGTTTGCCAAGGCATCGATACATCCAACCTCCATTGGGGTGCTTGGTTGAGTCGGTGTACATCACCATTCCACTTGCATTGGTAAGATCTTGTAAGAGCTTGGTTAAAAGCTTGAGTGTGTGTGAGATTTGAGCTGCCACTACCTAGTAGTTGATAGGAGCGTGTATATTCTTGTGTATGTTTCTTGTTTGCTGCTAACCATGGCAGGATTGCGCAAGGGGAAACAAGATGGTCATGCTCAACGTCAACATCTACACCTTCGACGAGATATGACGACTTCTTCACGTGATGCATATGAGGTACATGACTATAATTTTGCACAAGTTGCATGTAAGGTACCAGTCTATGATGGAAAGTATGATTCCGCTGCATACATTAATTGGGAGCTAGCAGTAGAAAAACAATTTGATGAGTATGATTTTTCTAATGCTCAAATGATTAAGGCTGCTAGTAATAAGTGTACCGGTTCTGCATCTTTTTGGTGGCATACTGTGGGGAATAAGCTTGAAACTTGGGATGAATGCAAAATACTGATGAGAAAAAGATTTGTGTTTTCATACTATAGACGTGCTCTCCTTGAGAAATGGGAACATCTAAAACAAGGTGACAAAACTGTTAGGGAGTACTTTCATGATTTTAAAATTTGTATCACTTATAGTGGTTTACAAGAATCTAATGAGAACACAATGACTAGATTTTTCAGAGGGCTTAATTTCAATATTCAGGCTGGGCTTGTTAATGTGACATATAATCATATAGGCCAATTGTTCATGCTTGCTTGCATTGTTGAGCGCAAAATTTTGGAGAATCCAATGGAGCAACAAGATATGCTTGTGCCTCCTATCACTGATGTTTTGCAGGAAGTTCAGAAAAGTCTCCAAAATGAGAAGAACGATATGTTTGAGATGTCACTTCCATCACTCGCGAATGAGGAGAAGGCTGATGCAGCTACATTATCTGAAGAAAGTTCGCAAGGTAAATTAAATGGTGCTGAGAGAAATGAAGGTGAGTATTCTCAAGGTGAGCTACACTTGTCCACTTTTCATGCTATAGTAGAGCAACCATTAGTGGAATCAATTGCTGAGTTGCCTTTGTCACAAGTTGATTTACTTGCTGTTCCTTGTGATAAAGAAGAGTTGTGTGATAATGTTTCACTTATATCCATGCCACAACTAGTGAATGAACATGTTAGTTCTACTATTTCTTTGTGTGCTGATTCTAAGCATGTTGTTCACATTACTAATGAAGTAGAGGAACGCGAATTGCTATCTTCTTTAAATACTTTGGGCTATGTTCAGTTTGATGATTTTTGTGAGCTCGATAATTTGAAGGAGAAATTATTTGATAAATCTGATTTGCCATGTCCAACTAATGCTATTTTTCATATCTTTGGCGAATATAATGATAGAGGAATATTTTTGGTGCACAGAGTTTACATTTGTTCAGATTTAGAACATCTTGTAGTTCCGGATAAAATATGCAAGCTAGAGAGACATGTTACTGCTAATCATATTGTCTCGAGTTTGTCTTGTTTTGATTGCAAGAAACAGGTTGTTTTCAGCGGACTGCGCGAAGAGCACCATATGGAAAAACTGAGGACGGTTTTCTGTGAAGAAGGGGAGGATGATGTGACCATGGCTACTATGGATACGACCATTGCTCACATCATGAATCAACAAGAAGACATCAAGATCAAGTCTTCCATGTGCTGCAATCTGATTCGGCCACGTGTTACATTGCTGACTTCAAACGGCCGCCAAATCTACATACGTGCTCCGTTTTGGGCCCGTGAGTACTTGATGGAAAGCTCTCGAAGTCCTCCTTCCAACGGATCCAGCCTCATCTCGGAATTCTATCTTTTTTGGCCGCAATCACGGAAGCAATGTGCTGCGTCACCTGTATTGGGCCAATGGGCTTGTAACTTTGTTTGGGACCCTGGCCCATGTGGGGCCCATGTGGGGTGCGCCCCAATCTGGTGGAGCACGACCCTTGGACCCTCTTGGTCGTCCTCCCACCTCTATAAATAGTTAGGTACCCCTTCAGGGTTTCTTGGGTTTTGATAGATTGAAGTTTAGCCATTGCTACTTGCTTGCAGCGCGCGTGTCGGCTAGACCGTCCGTCTGCTTGTTCTTCGGAACCCCAACTTATCATTTGTATTAAATTCCTATTTGCAATATCAGATTGCTTTTATCTTGTTCTTGCTTGTTTCTTCGATTTGCTTGCAGGAATAGAGTTGATCTGCACCGGCAAGATCAACAACCAACGGAGAGGTGTATCGATCGCTAAGGCGCAACACAACGTCTCGTACGGTTGTAGTCGGATCGTCAACGTTTCTCCCAAATCGTAGTTATCACAACTCACCGAAAGATCGGGCCAACAACAGCCTTGAGTGTCGAGAGGAACTCAGGGTTCATCACCTTT