Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127652_R498_DEL1116660

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cA2: NATEL BORO | Os127652RS1

Os XI-1B: R498 | R498

Chr11

9904229

9906982

SV Length:

Query Start:

Query End:

Allele sv Count:

2782 bp

13024336

13027117

12 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127652_127564_DEL1116530	Chr11	9904229	9906983	11825196	11827980	2785
127652_127742_DEL1116860	Chr11	9904229	9906982	13272778	13275559	2782
127652_132424_DEL1114640	Chr11	9904229	9906983	11916471	11919254	2784
127652_G630_DEL1117490	Chr11	9904229	9906982	13531174	13533954	2781
127652_R498_DEL1116660	Chr11	9904229	9906982	13024336	13027117	2782
127652_R527_DEL1116900	Chr11	9904229	9906982	13319574	13322355	2782
127652_S548_DEL1116230	Chr11	9904229	9906982	13225549	13228330	2782
127652_Tumba_DEL1116370	Chr11	9904229	9906982	13056727	13059505	2779
127652_Y3551_DEL1117440	Chr11	9904229	9906982	13087241	13090018	2778
127652_Y58S_DEL1119500	Chr11	9904229	9906982	13973756	13976536	2781
127652_YX1_DEL1117050	Chr11	9904229	9906982	12795507	12798287	2781
127652_MH63RS3_DEL1117300	Chr11	9904229	9906982	13304339	13307120	2782

>127652_R498_DEL1116660
AGCAAGCATGAACAATTGGCCTATATGATTATATGTCACATTAACAAGCCCAGCCTGAATATTGAAATTAAGCCCTCTGAAAAATCTAGTCATTGTGTTCTCATTCGATTCTTGTAAACCACTATAAGTGATACAAATTTTAAAATCATGAAAGTACTCCCTAACAGTTTTGTCACCTTGTTTTAGATGTTCCCATTTCTCAAGGAGAGCACGTCTATAGTATGAAAACACAAATCTTTTTCTCATCAGTATTTTGCATTCATCCCAAGTTTCAAGCTTATTCCCCACAGTATGCCACCAAAAAGATGCAGAACCGGTACACTTATTACTAGCAGCCTTAATCATTTGAGCATTAGAAAAATCATACTCATCAAATTGTTTTTCTACTGCTAGCTCCCAATTAATGTATGCAGCGGAATCATACTTTCCATCATAGACTGGTAACTTACATGCAACTTGTGCAAAATTATAGTCATGTACCTCATATGCATCACGTGAAGAAGTCGTCATATCTCGTCGAAGGTGTAGATGTTGACGTTGAGCATGACCATCTTGTTTCCCCTTGCGCAATCCTGCCATGGTTAGCAGCAAACAAGAAACATACACAAGAATATACACGCTCCTATCAACTACTAGGTAGTGGCAGCTCAAATCTCACACACACTCAAGCTTTTAACCAAGCTCTTACAAGATCTTACCAATGCAAGTGGAATGGTGATGTACACCGACTCAACCAAGCACCCCAATGGAGGTTGGATGTATCGATGCCTTGGCAAACACTTGCTGTACGGCTGCAATCAGATCTGTGGAGCTCTGGGTAGGCTTAAATATGTAGCAAAGGAATAGCAAATGCTCAAATCAGAGAACGCAAAGTTGAATAATTGTTCAAAGTCAAGTACCGTGCTGGTCCTAGGCTAGAACGTACTAGAGACGCGAGCCTAGACACAAACGGTACCACAAAATAGCACCAGAAACAACTCAAGCACACTCTGATGTATGAAAGCAAACTCAAAGATACAACTAATTTTTCCTTTTGCTTCTTTCTTTCCTTTTCTTTCTTTTCTATTTTCTTTTCTTTTTCTTTTCTCTTTTTTTTTCTTGGTGCGGCTTTTCTTCTCTTTTTTTTATGCACCTTTCTGCCTTTTTTTTTCTTTCTTTTTTTTATTTTTTTTACCAAAAACTGACTCAAGGACCTTAATGTAAGGTTACAGGGACTCAAACGTAAATATAAAATTTACAGGGACTCAAATGTAAAAGTCTAAACCCAAAATTAAAATTATACAAAAAAAATGGAATGCTGAATATATGCTGATTCCGTTTTTCCAAACAGATCTCGAAACCGACACCAAACAAAAATTCGCCAAGGTGTTTGACACAACTCGGAACCGTGGAAGAGAGGGAGGGAGTCGGACTCGACCAAAGGGGCGAGTGGGACTCGGCCAGGAGGTGGAGTGGATGGCAGCCGAATTTGGTGTATGGGATAAAAAGGAAACTGAATTTTAACCAATCCAATCTACTATATCTTTCCAAAACAAACTTGACTACTTCCAAAATCAGATATGGTAATTCACCTTCCTCCTCTCGTGCACGACACAGGCACGGCCAAAAAAAACACACACAAGGATCGGCAAACTCTAGATGCAACTCAAGAACTCCAAAACTAACCGACAGAAACTTCTGAAAACTACAAAAATAGAACCGTGGCAGCGAGCCAATTCCGTTTTTGTAGGTCCCGACAACAACAGAGACACGGTGGCAGCGACGACTGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAGCTAGACGCTAAGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAATATGGCTAGGTAAATGATACGAATTTTTTTGTATGGCTATTTTCTGGTTATAGGAAGATAAAAACTCACCGAGCAACGAAAGCTCTGATACCACCTGATGAACCCTGAGTTCCTCCCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACAATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGATAAAAGCAATCTGATATTGCAAATAGGAATTTAATACGAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACCAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGTGACGCAGCACCTTGCTTCTGTGATTGCGGCCAAACAAGATAGAATTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCGCAAAACGGAGCACGTATGTAGATTTTGCGACCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAAGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCAA