Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127652_Lemont_DEL1147810

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cA2: NATEL BORO | Os127652RS1

Os GJ-trp: Lemont | Lemont

Chr11

21834335

21837496

SV Length:

Query Start:

Query End:

Allele sv Count:

3170 bp

22384871

22388040

13 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127652_117534_DEL1131890	Chr11	21834335	21843854	12611456	12625423	13968
127652_127742_DEL1142760	Chr11	21834335	21846692	13260692	13277719	17028
127652_G630_DEL1142200	Chr11	21834335	21846692	13519088	13536113	17026
127652_J4155S_DEL1146210	Chr11	21834335	21846690	25355109	25367681	12573
127652_Lemont_DEL1147810	Chr11	21834335	21837496	22384871	22388040	3170
127652_R498_DEL1139770	Chr11	21834335	21836496	13027117	13029277	2161
127652_R527_DEL1142620	Chr11	21834335	21846692	13307488	13324515	17028
127652_R9311_DEL1144990	Chr11	21834335	21846692	13190760	13207757	16998
127652_S548_DEL1141170	Chr11	21834335	21846692	13213463	13230490	17028
127652_Tumba_DEL1139920	Chr11	21834335	21843854	13047717	13061664	13948
127652_Y58S_DEL1144750	Chr11	21834335	21843854	13971596	13985548	13953
127652_YX1_DEL1139590	Chr11	21834335	21836496	12798287	12800447	2161
127652_MH63RS3_DEL1144640	Chr11	21834335	21846692	13292253	13309280	17028

>127652_Lemont_DEL1147810
GTGTCACACCCCGAAGTTTTCCTCCCAAGCCAAATTGTAAATTACAAATGACCCCAAGAAAATGCAGAGGAAATCAGGATAAAACCCTAAGAAAACAATGCAAATAATAATCGGATTTGACATGTGGAATTTTTCTTGAATTCTACATGTCGAAATTCATTAACAGGATTTTTAGTGGAATTTTCAGAGCTCTAGAAATAATTTTAACCAATTAAAAATCACTAAAGTGCAATTTTTAATTCCAGGGAAAATCCTTTTCCTTTTTCTTTTTCTTTTCCCTCCCTTTTTCCTCCTTTTTTCTTTTCGGATGGGCCGCCGGCCCATTCCCCTCCTTCCTCCCCCTCCTCCTTGCTGGGCCGGCCGCAGGCCGAGGGCCCAGCCTGGCAGCCGCCGCCCGCCTCCTCTCTCGGGGTCGCCGACAGGTGGGGCCCACCTGTCGGGCCCGTCTCCCACCTCCCGCCGATCCCGGCGCGCCGCCGCGCCCGCAACCACCGCCGCGCCCACGTCTCCGCCTTCCCCGGGCCACGTCGGCCACGCCCGCGCGTGCGCCGCGTCTCCCGCGCCCTTTCCCCTCTCTCTCCCGCTCGCGCCCGCGCCCGAGATGGCCGGGATTCGAAAACCGAATCCCGCCTCTCTCTCCTCCCCACTCCCCCACGTCGGCCGTCGAATCCCGCCGCTCCCGGCCACGTCCGACTCCCTCTCCCCCTTTTTAAGCATCGCCGTCCTCCTCTCTCGCTTTTTCCCCATTTCGCCGATCTCTCCCGAGCTCCCCATCGCCTCCGCGCCGTGCAACCACCCGCCGCCGCCGCTTTTGCTACTCCGGCCGCCGCTAGCCGCCGCTAGGCTCGTCGCCGTCTCGCGCCGTCGCCGCCGTTAGCTTCGCGGGGTCGAAATCTACCTCGGCCGCCCCTTCCCCGTCGAGGTTCGCCGCCGGAGACCCATCCCCGTCGTGTGCCGGCAAGTGGCGCCATGGCCGCCGCCTTCGGCCGGCACTCTCGCCCTCCCACGCTCTTTCCTCTCTCTCTAATCCCTCTCCTTTTGTTCGTTAGGAGGTTCCGGAGCTCGTCCCGCCGTCGTCGTCGTCCTCCGTCGGCCGCCGTCGTCGACCGTTGTCGGTGAGGCTTCCCCCTCCTCTTTCTCCTTTTCCCCGTACCGTGTAGCCGCGTGCGCGCCGCTTAGCCGCGTAGCCGCCGCTCCTCCTCTAGCCGCCGCTCCCCGCCGCCGGTCGGTCGCCGTCGGTCGCCGCCTTGCGCCGCTGCCGCATGCGCGCCGCCGCCGTGTGAGCGCCGCGCCGCCGGCGCCATGGTCGCCGCCGTCTCGCGCCGCGCCCGCGCGTCCCGGCCGCGAGGTCCCGCCGCCGTCCGATCTACCCTTGGGTAGATCGGGGCCGTCGGTTCGGCCGCCACGTGGTGCCGCCGCCCCTCCTTTTCCCCGTGCCGCTGACCAGTGGGCCCGCGCGCCGCCACCCCCTTTCTCTCTCTCCCGGTCGCTGACCGGTGGGCCCCGCCTGTCGGCGCCGCGCCCCCTCCGTGCTGACGTCAGCCCTGGTTAATATTGCGCAATAAATTATTTAAGGATTTCTTTTATAGTAATAAACACAGTGAATCTTCTAAAAATCATAACTAATTCATCCGAGCTCCGTTTAATCCCATTCAAGTCTCAGTAAATCAAGAAAAATGTGTAGAATCCATTAAAAATGGTTTTGTTCTCTGTTTCAGTAGTCTTATAGCCTGTTTGCAATGTTTGCTTTGTATGTCGCTAGATTCCGATCCCTCCGACGCTCCGGTGTACTTCGAGATAGTCGCCGAGGTCCCTCCAGCAGCAGAGCAAGGCAAGTCATGCTTGTCACTTGAACATGTTGATCCTATATTGCAAATGCTCTATTGTTTTCTTTCAAATATTGCATTGTTTTATAATATCACTATGGGATGGATACCTATTGTTACAGCCATGCTTTTGGATATCATGCTCCTTTGTTAGCTTGGGTTATAACATGATTAGACTTTGGACTAGGAATTGCTTAGCCATGCTTAGTTCAACTAGCACACATTGGGGATCTCATTTAAAACCTAGACTATAGGTTTATATGATAATGTTGGTTTAATACCACCGCTCTGGTGTTGGTTAAATAAAATGAACCACATGGTGGGCTGTGGGTGCATGGTTTTGCTGGTCGCACCCATGGCAGTTAAGGACCGGTTCGCGGGATGCCCTGGAAGAATTTATCGTACTTACCACAAGCCAGCGTGGGCAACGGCTGGGCTTGTAGTGTAGCTTTCCTCTAGTCGACGCATCCAGGCAAGGGTGGGCGTGATGGAGCGGGGCGGGCCCTGCGACGGCCTCTGTCGCTTCCGGATTCACCTAGGCACGAGAGGGGACTGCCCGTCGCCCGCTGGGGACGGGGGTGAAACCTGAGGTGTGGTGTGCTTGGCTAGAGGGGGTTATGCGAAGGGTCCTGTCACGGCCTCTTTCCGGTATGTCGTGGTGGCATGTCGGCGCACGGAAACGTGTCGTGGGGCTGTGTCTTGTGGGTACAGTTGTACACCTCTGATCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGGGCGGTCAACCAGATTCACCGTGATTAGTCTCACCCTAGTGTAATCTGTTGAACTTGGATAGTTTAGGTGGATGGTTGGGCCTGTCGCAACGTGGGTTAGCGTTGGACAGCGGATGTTTAATACTGCTTAATTATTACAACTGTTTTCGCATTCAATTCCTGTTTATAAATGCCAGTATTTATGCAAATGAACCTGCTTAGCTATCCCTTGTTAAATCCCTGCATCATACCTCTATTCCGGTATGACTTGCTGAGTACAGTGGGTAGTACTCAGTCTTGCTCTACTTTTCCCCCCAACCTCAGAGTTCGAGTATGTGTCCGATGGCGGGTTTTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATGCCTGTGGAGTGGTGTTCCCGCTGCAGTTCTAGTCAAGGATTAGCTCCAGTTATCTTTTGTTTTCCGCTGCATTCCTGTAAGACTTTTATAATGTTTGTAAGACGTGGATCTGTATGTCAACATTGTCGTTTGTGTACCCCGGCTGGTCCTGGACGGGGGTTTTAATACACATTCTGCTTGGAATTCTATTCGGGAATTTCTGGGCGTGACA