Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127652_IR64_DEL0432180

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cA2: NATEL BORO | Os127652RS1

Os XI-1B1: IR 64 | OsIR64RS1

Chr04

16353489

16355043

SV Length:

Query Start:

Query End:

Allele sv Count:

1554 bp

27270627

27272180

27

Gene_id	Chromosome	Start	End
OsIR64_04g0021500	Chr04	27264102	27273790

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127652_02428_DEL0442720	Chr04	16353489	16355043	33809287	33810840	1554
127652_117425_DEL0437600	Chr04	16353489	16355043	32301287	32302840	1554
127652_127564_DEL0432910	Chr04	16353489	16355043	34868112	34869665	1554
127652_128077_DEL0441430	Chr04	16353489	16355043	32254535	32256088	1554
127652_132424_DEL0433180	Chr04	16353489	16355044	3383911	3385471	1561
127652_Azucena_DEL0441970	Chr04	16353489	16355043	32191900	32193453	1554
127652_Basmati1_DEL0438710	Chr04	16353489	16355043	31825761	31827314	1554
127652_D62_DEL0431990	Chr04	16353489	16355028	20426880	20428421	1542
127652_DG_DEL0430610	Chr04	16353489	16355028	20769459	20771000	1542
127652_DHX2_DEL0442480	Chr04	16353489	16355043	32946947	32948499	1553
127652_G8_DEL0434660	Chr04	16353489	16355043	28622315	28623867	1553
127652_IR64_DEL0432180	Chr04	16353489	16355043	27270627	27272180	1554
127652_J4155_DEL0441360	Chr04	16353489	16355045	957961	959525	1565
127652_J4155S_DEL0443190	Chr04	16353489	16355045	967899	969463	1565
127652_Kosh_DEL0443560	Chr04	16353489	16355043	33537272	33538825	1554
127652_LJ_DEL0441050	Chr04	16353489	16355043	33018568	33020121	1554
127652_LK638S_DEL0433260	Chr04	16353489	16355045	972050	973614	1565
127652_Nipponbare_DEL0443200	Chr04	16353489	16355043	33537551	33539104	1554
127652_R527_DEL0435700	Chr04	16353489	16355043	28385947	28387500	1554
127652_R9311_DEL0429230	Chr04	16353489	16355045	1056958	1058522	1565
127652_S548_DEL0435950	Chr04	16353489	16355043	27867004	27868557	1554
127652_TM_DEL0434200	Chr04	16353489	16355028	18933564	18935105	1542
127652_XL628S_DEL0434340	Chr04	16353489	16355043	28967088	28968641	1554
127652_Y58S_DEL0431360	Chr04	16353489	16355045	954277	955841	1565
127652_YX1_DEL0433620	Chr04	16353489	16355043	27368682	27370235	1554
127652_ZH11_DEL0443450	Chr04	16353489	16355043	33006606	33008158	1553
127652_MH63RS3_DEL0436190	Chr04	16353489	16355028	21479093	21480634	1542

>127652_IR64_DEL0432180
CAGATTTCAAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATTTGAATTTAATTATATTGCTTGAAAAATATTATGCATTGATAGGATCGCACTTAATCTGTTTGTCCCGTCTGCAAGGCAGATTGGCGGACCTACCTAGTTTGTTGCATTTGATCCTTCCTTTGTTAATTGTTATACCATGTTCCCTTGTAACCACCCAGTTGCGCCTCGGGAATCGTGCACTCTGTGCGAGTACCGACGGTCGCCTTCAAACTTCAAATCTGAGTAACAACTTGGGTAAAACTTGGGTTTTACAAAAGACTTGGAAAACCCGACACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAACCGCGGACCGGGGAACGTACCGGGTGTACGGTTTTCCCGCTCTTGCACCTAAGGACCGTTTCCTTGGAATTTCATCCAAACATAAGACAAGTACGACCACATGGGTGGAATGGGACACTCCTGGCTGAGTAACTAGCTTATCAGGGGAGCCTTGATGCCGAGAGACATGTGGATTCGCCGGGGTGGTGTCGGGGAGGACCCCTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTCGGCATATGGTAAACCTGTGTCGGCTTTGGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGTGGCTGATCCCCACGGGCTGGGTGATCCGGGTTAGTAATGTCGTGTGGGTAAAGTGTACCCCCTCTGCAGAGGTTAACAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTCCTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTGTTGTGGAAAGGGGTTCGATGTTTAAAAAATCTGCAGCTGATGGGATCAGCTAGGCCCGGGTGGCCGTTTGAAAGTTGTTGGCCCGGGTGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGATTCAATTCTAAAGACTGATACATTGCACATACTCCGACCGGACAAGATGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTTCAGAAAGGAGTTCAAATAAAATCAATTGTAAAAACAACAGCCTTTTCTTGAAGCCTGCATTAAACACTTATTTCCCATGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATAAATAATCCCCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAGGAGTTCTTCCAAGAGCAAGCCGGCTACGATGAGTATTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGTTGTTTGGTCCAAGTCCTGGCTTCCATTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATAATCCGTCTTCCTGTGATAACAGCACTATTTTCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAGTTCCGGTCGGTACTAGTCCGGGGCGTGACA