Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127652_127742_DEL0430030

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cA2: NATEL BORO | Os127652RS1

Os XI-1B2: PR 106 | Os127742RS1

Chr04

16618844

16619713

SV Length:

Query Start:

Query End:

Allele sv Count:

870 bp

28913786

28914655

29

Gene_id	Chromosome	Start	End
OsPr106_04g0022670	Chr04	28906579	28916265

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127652_117534_DEL0423080	Chr04	16618844	16619713	28745367	28746236	870
127652_125827_DEL0432130	Chr04	16618844	16619713	26372674	26373544	871
127652_127518_DEL0434770	Chr04	16618844	16619713	31287826	31288696	871
127652_127742_DEL0430030	Chr04	16618844	16619713	28913786	28914655	870
127652_132424_DEL0433970	Chr04	16618844	16619713	30448715	30449584	870
127652_Azucena_DEL0442810	Chr04	16618844	16619713	31096631	31097498	868
127652_Basmati1_DEL0439610	Chr04	16618844	16619713	27851820	27852689	870
127652_CN1_DEL0435230	Chr04	16618844	16619713	28932306	28933175	870
127652_DG_DEL0431440	Chr04	16618844	16619713	29351655	29352524	870
127652_FS32_DEL0433820	Chr04	16618844	16619713	29013651	29014520	870
127652_G8_DEL0435540	Chr04	16618844	16619713	25356586	25357456	871
127652_HZ_DEL0430140	Chr04	16618844	16619713	29085453	29086322	870
127652_II32_DEL0434580	Chr04	16618844	16619713	25569465	25570335	871
127652_IR64_DEL0432950	Chr04	16618844	16619713	26506676	26507550	875
127652_J4155_DEL0442350	Chr04	16618844	16619713	23960325	23961195	871
127652_Kosh_DEL0444410	Chr04	16618844	16619713	28749746	28750642	897
127652_Lemont_DEL0441840	Chr04	16618844	16619713	28868773	28869642	870
127652_R498_DEL0434640	Chr04	16618844	16619713	27805970	27806839	870
127652_R527_DEL0436600	Chr04	16618844	16619713	29014122	29014991	870
127652_R9311_DEL0429990	Chr04	16618844	16619713	29621766	29622635	870
127652_S548_DEL0436820	Chr04	16618844	16619713	28495303	28496172	870
127652_WSSM_DEL0430140	Chr04	16618844	16619713	28474708	28475577	870
127652_XL628S_DEL0435190	Chr04	16618844	16619713	29595301	29596170	870
127652_Y3551_DEL0437360	Chr04	16618844	16619713	25869215	25870085	871
127652_Y58S_DEL0432340	Chr04	16618844	16619713	30718596	30719465	870
127652_YX1_DEL0434500	Chr04	16618844	16619713	27369366	27370235	870
127652_ZS97RS3_DEL0434340	Chr04	16618844	16619713	29803007	29803876	870
127652_OglaRS2_DEL0451010	Chr04	16618844	16619458	26014923	26015533	611
127652_MH63RS3_DEL0437000	Chr04	16618844	16619713	26128152	26129022	871

>127652_127742_DEL0430030
cccgacgtggctgatccccacgggctgggtgatccgggttagtaatgtcgtgtgggtaaagtgtaccccctctgcagaggttaacaaactgttcgaacagccgtgcccacggtcatgggcggatgtgaggtgattcctagcgtagttttgtttgactactgcttgtgaaattgctgttgtggaaaggggttcgatgtttaaaaaatctgcagctgatgggatcagctaggcccgggtggccgtttgaaagttgttggcccgggtggccgtttgaaaagctgttggccgggtgccaaccttgattcaattctaaagactgatacattgcacatactccgaccggacaagatgcactgtctcatccgtgtcgtttgagaagcactcacttagttgttttcagaaaggagttcaaataaaatcaattgtaaaaacaacagccttttcttgaagcctgcattaaacacttatttcccatggcttgctgagtactcccgtactcacccttgctctatataaataatCCccccccagttgctgaagaagatgaagcggatcctgctgatgaggagttcttccaagagcaagccggctacgatgagtattagggtttcggcctagttcccaagtcgcgcctgtgttgtttggtccaagtcctggcttccatttcccttttgtaatgcagttgtgagctcgggatctgtccgcagcccaacatgactgtacctctactctataataaagagacctctgttgctgtgataatccgtcttcctgtgataacagcactattttctgggactggtatcgattaacaggttaatttggagcgtcacgggctagttccggtcggtactagtccggggcgtgaca