Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127652_127564_DEL1126090

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cA2: NATEL BORO | Os127652RS1

Os XI-3A: LIMA | Os127564RS1

Chr11

13324058

13326826

SV Length:

Query Start:

Query End:

Allele sv Count:

2783 bp

11825196

11827978

22 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127652_127518_DEL1126690	Chr11	13324058	13328509	28646172	28650624	4453
127652_127564_DEL1126090	Chr11	13324058	13326826	11825196	11827978	2783
127652_127742_DEL1127660	Chr11	13324058	13326826	13272778	13275558	2781
127652_CN1_DEL1124800	Chr11	13324058	13328508	14797888	14800779	2892
127652_DG_DEL1125590	Chr11	13324058	13328508	15083535	15086426	2892
127652_FH838_DEL1126670	Chr11	13324058	13328508	15082589	15085480	2892
127652_G46_DEL1125080	Chr11	13324058	13328508	13905988	13908879	2892
127652_G630_DEL1125480	Chr11	13324058	13326826	13531174	13533953	2780
127652_G8_DEL1126120	Chr11	13324058	13328508	13268649	13271539	2891
127652_HZ_DEL1130490	Chr11	13324058	13328508	13838807	13841698	2892
127652_II32_DEL1125790	Chr11	13324058	13328508	13249677	13252568	2892
127652_J4155_DEL1128040	Chr11	13324058	13328508	13347039	13349930	2892
127652_J4155S_DEL1130850	Chr11	13324058	13328508	13859211	13862102	2892
127652_LK638S_DEL1129190	Chr11	13324058	13328508	13891253	13894144	2892
127652_R527_DEL1127020	Chr11	13324058	13326826	13319574	13322354	2781
127652_S548_DEL1124880	Chr11	13324058	13326826	13225549	13228329	2781
127652_XL628S_DEL1131150	Chr11	13324058	13328508	13885322	13888213	2892
127652_Y3551_DEL1127160	Chr11	13324058	13328508	13087242	13091655	4414
127652_Y58S_DEL1127120	Chr11	13324058	13328508	13973757	13978173	4417
127652_YX1_DEL1123220	Chr11	13324058	13326826	12795507	12798286	2780
127652_ZS97RS3_DEL1127480	Chr11	13324058	13328508	13841292	13844183	2892
127652_MH63RS3_DEL1128270	Chr11	13324058	13326826	13304339	13307119	2781

>127652_127564_DEL1126090
agcaagcatgaacaattggcctatatgattatatgtcacattaacaggcccagcctgaatattgaaattaagccctctgaaaaatctagtcattgtgttctcattagattcttgtaaaccactataagtgatacaaattttaaaatcatgaaagtactccctaacagttttgtcaccttgtcttagatgttcccatttctcaaggagagcacgtctatagtatgaaaacacaaatctttttctcatcagtattttgcattcattccaagtttcaagcttattccccacagtatgccaccaaaaagatgcagaaccggtacacttattactagcagccttaatcatttgagcattagaaaaatcatactcatcaaattgtttttctactgctagctcccaattaatgtatgcagcggaatcatactttccatcatagactggtaacttacatgcaacttgtgcaaaattatagtcatgtacctcatatgcatcacgtgaagaagtcgtcatatctcgtcgaaggtgtagatgttgatgttgagcatgaccatcttgtttccccttgcgcaatcctgccatggttagcagcaaacaagaaacatacacaagaatataacgctcctatcaactactaggtagtggcagctcaaatctcacacacactcaagcttttaaccaagctcttacaagatcttaccaatgcaagtggaatggtgatgtacaccgactcaaccaagcaccccaatggaggttggatgtatcgatgccttggcaaacacttgctgtacggctgcaatcagatctgtggagctctgggtaggcttaaatatgtagcaaaggaatagcaaatgctcaaatcagagaacgcaaagttgaataattgttcaaagtcaagtaccgtgctggtcctaggctagaacgtactagagacgcgagcctagacacaaacggtaccacaaaatagcaccagaaacaactcaagcacactctgatgtatgaaagcaaactcaaagatagaactaatttttccttttgcttctttctttccttttctttcTtttctattttattttctttttcttttctctttttttttcttggtgcggcttttcttctcTtttttttatgcacctttctgccTttttttttctttcttttttttatttttttttaccaaaaactgactcaaggaccttaatgtaaggttacagggactcaaacgtaaatataaaatttacagggactcaaatgtaaaagtctaaacccaaaattaaaattatacaaaaaaaaaatggaatgctgaatatatgctgattccgtttttccaaacagatctcgaaaccgacaccaaacaaaaattcgccaaggtgtttgacacaactcggaaccgtggaagagagggagggagtcggactcgaccaaaggggcgagtgggactcggccaggaggtggagtggatggcagccgaatttggtgtatgggataaaaaggaaactgaattttaaccaatccaatctactatatctttccaaaacaaacttgactacttccaaaatcagatatggtaattcaccttcctcctctcgtgcacgacacaggcacggccaaaacaaacacacacaaggatcggcaaactctagatgcaactcaagaactccaaaactaaccgacagaaacttctgaaaactacaaaaatagaaccgtggcagcgagccgattccgtttttgtaggtcccgacaacaacagagacacggtggcagcgacgactgtggtacaaaacgtgaccagaactcgaaactctaaacgagctagacgctaagaccagcaacacgacgtgacgatgcaacacaaaattcaacaaagcaaaaactgaaaagaacaatgcaatggcacaatatggctaggtaaatgatacgaatttttttgtatggctattttctggttataggaagataaaaactcaccgagcaacgaaagctctgataccacctgatggaccctgagttcctctcgacactcaaggctgttgttggcccgatctttcggtgagttgtgataactacgatttgggagaaacgttgacgacccgactacaaccgtacgagatgttgtgttgcgccttagcgatcgatacacctctccgtgggttgttgatcttgccggtgcagatcaaccctattcctgcaagcaaatcgaagaaacaaacaagaacaagataaaagcaatctgatattgcaaataggaatttaatacgaatgataagttggggttctgaagaacaagcagacggacggtctagccgacacgcgcgctgcaagcaagtagcaatggctaaactttaatctaacaaaaccccagaaaccctgaaggggtacctaactatttatagaGgtgggaggacgaccaagagggtccaagggtcgtgctccaccagattggggcgcaccccacatgggccccacatgggccagggtCccaaacaaagttacaagcccattggcccaatacaggtgacgcagcaccttgcttctgtgattgcggccaaacaagatagaattccgagatgaggctggatccgttggaaggaggacttcgagagctttccatcaagtactcacgggcccaaaacggagcacgtatgtagatttggcggccgtttgaagtcagcaatgtaacacgtggccgaatcagattgcagcacatggaagacttgatcttgatgtcttcttgttgattcatgatgtgagcaatggtcgtatccatagtagccatggtcacatca