Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127564_127742_INS1114850

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-3A: LIMA | Os127564RS1

Os XI-1B2: PR 106 | Os127742RS1

Chr11

12633412

12633425

SV Length:

Query Start:

Query End:

Allele sv Count:

17046 bp

13277724

13260679

10 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127564_117534_INS1116860	Chr11	12633412	12633425	12625428	12608370	17059
127564_127742_INS1114850	Chr11	12633412	12633425	13277724	13260679	17046
127564_G630_INS1115280	Chr11	12633412	12633425	13536118	13519075	17044
127564_R498_INS1114160	Chr11	12633412	12633425	13029282	13012239	17044
127564_R527_INS1114770	Chr11	12633412	12633425	13324520	13307475	17046
127564_R9311_INS1115770	Chr11	12633412	12633425	13207762	13190747	17016
127564_S548_INS1114170	Chr11	12633412	12633425	13230495	13213450	17046
127564_Tumba_INS1114010	Chr11	12633412	12633425	13061669	13044633	17037
127564_YX1_INS1113650	Chr11	12633412	12633425	12800452	12783415	17038
127564_MH63RS3_INS1115600	Chr11	12633412	12633425	13309285	13292240	17046

>127564_127742_INS1114850
tggtggggcactgcgtgtcacgcccagaaattcccgaatagaattccaggcagaatgtgcattaaaatccccgtccaggaccagccggggtacacaaacgacaatgttgacatacagatccacgtcttacaaacatcataagagtcttacagaaatgcagcggaaaacaaaagaaactggagctaagccttgactaaactgcagcaggaacaccactccacaggcatcctcgacggcacggacgaagcctactcctcggagaaaccttcatctgacccgtactcaaactctggggttgggggaaaagtagagcaagactgagtactacccactgtactcagcaagtcataccggaatagaggtatgatgcagggaatcatcaaagaaaagctaaagtggttcatttgcataaagcgagcattgataaacagagattgaaagatttaaacagttgtaataagtaattaagcagtattaatcatccactgtccaacgctacaccacgttgcaacaggcccaaccatccacctaaactatccaaattaaaggattacactaaagtgagactaatcacggtgaatctggttgaccgcccataaccgtgggcacggctattcgaatagttttactctgatcagaggtgtacaactgtacccacaagacacagccccacgacacgtttccgtgcgccgacatgccaccacgacataccggaaagaggccgtgacaggacccttcgcataaccccctctagccaagcacaccacacctcaggtttcacccccgtccccagcaggcgacgggcagtcccctctcgtgcctaggtgaatccggaagcgacagaggccgtcgcagggcccgccccgctccatcacgcccacccttgcctggatgcgtcgactagaggaaagctacactacaagcccagccgttgcccacgctggcttgtggtaagtacgataagttcttccagggcatcccgcgaaccggtccttaactgccatgggtgcgaccagcaaaaccatgcacccacagcccaccatgtggttcattttaattaaccaacaccagagcggtggtactaaaccaacattatcatatagacttatagtttaggttttatatgagattccccattgtgtgctagttgaactaggcatggctaagcaattcctagtcctaactctaatcatgttataacccaagctaacaaaggagcatggtatcaaaattatggctgtaacagtaggtaaccatcccctagtgatattataaaacaatgcagtatttgaaaggaaacagtagagcatttgcaatataggagcaatatgttcaagtgacaagcatgacttgccttgctctgctgctggagggacttcggcgactatctcgaagtacaccggagcgtcggagggatcggaatctagcgacatacaaagcaaacattgcaaacaggctataagactactgaaacagagaacaaaaccatttttaatggattctacacatttttcttgatttactgagacttgaatggacttaaacggagctcggatgaattagctatgaattttagaagattcactgtgtttattactataaaagaaatccttaaataaattattgcgcaataaactccagggctgacgtcagcgcggggcggcgcggcgccgacaagcggggcccaccggtcagcgacacggggagagagagaaggggcggcggctcgcgggcccaccggtcagcggcacgggggaaaaggatggggcggcggcgccacgtggcggccgaaccgacggccccgatctacccaagggtagatcggacggcggcgggacctcgcggccggggcgcgcgggcgcggcgcgagacggcggcgaccatggcgccggcggcgcggcgctcacacggcggcgcgcgcatgcggcagcggcgcaaggcgacgatcgacggcgaccgaccggcggcggagagcggcggctagaggaggagcggcggctacgcggctaagcggcgacgcggcggctaagcggtgcgggagagagggaaaacgaggagggggacctcaccgacaccgatcgacgacggcgggcgacggaggatgacggcgacggcgggacgagctccggagccccctaacgaacaaaaggagaggggttagagggagcgaggagagtgcgagagagcgagagcgccggccgaaggcggcggccatggcgccactcaccggcacacgacggggacggctctccggcgacggacctcgacgaaagaggggtggacggggtagatcttgaccccgcgaacctaacggcggcgtcggcgcaagacggcggcgagcctagcggcggctagcggcggccggagtagcaaaagcggcggcggcgggtggttgcacggcgcggaggcgatggggagcacgggagggatcggcgaaatggggaaaaagagagagagggcggcggcgatgcttaaaaagggggagaggggtccggacgtggccgggagcggcgggaatcgccggccgacgtgggggagtggggaggagagagaggcgggattcgtttttcgaatcccggccatctcgggcgcgggcgcgaatgggagagagaggggaaagggcgcgggggatgcggcgcacgcgcgggcgtggccgacgtggcccgggagcggcggagacgtgggcacaacggccgttacggcgcggcggcgcgggcgggatcggcgggaggtgggggaaggacccgacaggtgggccccacctgtcggcgaccccgagagaggaggcgggcggccggctgtcgggctgggcctcggcctgcggccggcccagcaaggaggagggggaggaaagagaggggaaatgggccgacggcccatttaaccaaaaggaggaaaacgagggaaaaagaaaaagaaaaaggaaaaaggattttccttggaattaaaaattgcacttgctcaattttaattggttaaaattatttctagagctctgaaaattccactaaaaatcctgttaatgaatttcgacatgtagaactcaagaaaaattccacatgtcaattccgattattatttgcattattttcttagggttttctcctgatttctccagcattttcttagggtcttttataaattacaatttttggcttaggaggagaactacagggtgtgacaaacctacccccccttaaacggaatctcggccccgagattcggaggagctggtgaagaggtccgggtgggcggctttcaactcatcttccctttcccaggttgcttcctcttcggaatgatgactccactgaactcggcaaaacctggtgaccttgtttctggtcctcctttcgctgatatcaagtatgcgaaccgtcttctccacataggtcaggtcctcctggatatcgatgtgttccgaatcagcctgttcctcaggtacccttaagcacttctttagttgagaaacgtggaacacgtcatggatgccgatcatgttggatggaagttctagctgataagcaacttctccccttcgttccaaaattttgtatggtcccacgaagcgtggtgccaacttgcctttcgtctgaaaacggtgtactccccggagcggagtgacacgaaggtacacgtaatctcctgcctcgaaagtgagctcccttcgacggttatccgcgtagctcttctgtcgagactgggcaatcctcaacctttccctgatgattctgactttctcttctgcttccgctaatacttctgttccgaacagttgacgttcgcccgtctgatcccagaagagaggtgtgcggcacttccggccgtataacgcttcgaacggtgccatctgtagactggcctggtagctgttgttgtacgagaattccgcatatggtaagcttttatcccaagccccaccaaaatcaagagcgcaagctctcagcatatcctccaagatttgattgactcgctcggtctgaccatcagtttgcgggtgataggccgtgctgaaatttaaacgggtccccaactcttcctgcagtttctgccaaaattttgaggtgaactgactacctcggtcggatactatcttcctgggtaccccatgcaaacacatgatccttgcgaggtacaactctgccaatctctttcccgtataggtggtatgtactggtataaagtgagccaccttggtgagtcgatccacgactacccagattgaatcatgtcccgatgatgtccggggcagtcccgtgataaagtccattccaatctcctcccacttccattccgggatttgaagaggttggagtaaacctgctggtctttggtgctctgccttcacttgttggcaaacatcgcagagtgcgacgaattcagctatttctctcctcatgctgacccaccaaaacttttctttgaggtcttgatacattttagtactgcctgggtgaatggagtactgggtctgatgagcttcggtgagtatcagatccttcaattccttgtcgtccggtacacacaatctttctcccatccagattgtgccatgctcatcctcaaggaaatcccgagcctttccgactctcatgttctttttcagttctgctatttccggatcatttacttgagcggctctaacttgatccacgagcgtaggccgtgcctccagagcggctacaaacccgtgttcaacaactcccatgttgagatgttcaagctcctgccgcaattcctcacacatgctctcgatgcatagagcagtgcagtaacttttccggcttaaagcgtctgccaccacattggccttacccgggtggtagtgaatactcatgtcatagtctttgattagctccaaccatcttcgttgtcgaaggtttaggtccggttgggtgacttttatggtccgtatatacttcgcagcggttgccgatcagatagtgcctccagattttcaaagcatgaaccactgctgccaattctaagtcatgagttgg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