Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127564_127742_DEL0429070

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-3A: LIMA | Os127564RS1

Os XI-1B2: PR 106 | Os127742RS1

Chr04

15102605

15103260

SV Length:

Query Start:

Query End:

Allele sv Count:

677 bp

28909787

28910463

21

Gene_id	Chromosome	Start	End
OsPr106_04g0022670	Chr04	28906579	28916265

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127564_117534_DEL0430690	Chr04	15102605	15103260	26889743	26890419	677
127564_125619_DEL0432250	Chr04	15102605	15103260	28680135	28680801	667
127564_127652_DEL0429690	Chr04	15102605	15103260	27505264	27505940	677
127564_127742_DEL0429070	Chr04	15102605	15103260	28909787	28910463	677
127564_D62_DEL0426920	Chr04	15102605	15103260	28339612	28340288	677
127564_G46_DEL0421080	Chr04	15102605	15103260	27885970	27886646	677
127564_G8_DEL0431450	Chr04	15102605	15103260	28619001	28619677	677
127564_HZ_DEL0429250	Chr04	15102605	15103260	29081454	29082130	677
127564_II32_DEL0431040	Chr04	15102605	15103260	28838381	28839057	677
127564_IR64_DEL0422070	Chr04	15102605	15103260	27267310	27267986	677
127564_LK638S_DEL0422230	Chr04	15102605	15103260	28836647	28837323	677
127564_R498_DEL0428780	Chr04	15102605	15103260	27801971	27802647	677
127564_R527_DEL0431860	Chr04	15102605	15103260	28382632	28383308	677
127564_R9311_DEL0428400	Chr04	15102605	15103260	28990540	28991216	677
127564_S548_DEL0431680	Chr04	15102605	15103260	27863689	27864365	677
127564_TM_DEL0421490	Chr04	15102605	15103260	27028326	27029002	677
127564_WSSM_DEL0428600	Chr04	15102605	15103260	28470709	28471385	677
127564_XL628S_DEL0421770	Chr04	15102605	15103260	28963775	28964451	677
127564_YX1_DEL0427850	Chr04	15102605	15103260	27365367	27366043	677
127564_ZS97RS3_DEL0430850	Chr04	15102605	15103260	29177720	29178396	677
127564_MH63RS3_DEL0432270	Chr04	15102605	15103260	29402780	29403456	677

>127564_127742_DEL0429070
ataatctttgcacatggtttcagatataactttacgaaacattaatgcatgcatatagcatagcatcaacaattagtttgaagaaagtgcttggaggtttcacattggcgtactgccattgccaatagtggagtaaatattttgtgacagttgaaatttgaagtacgctgtgttagtagtataagtaatatttagatattagagcttttagatggaacatatgttgggaacttccggtgggctacttttgatgttaattgatgctctatgttctttcaagtcattgacacatgatattgtaatgtttcttatggtgttatacacaccggtctattataaagtagtaatcctattatgacttatgcactactatgaatttgtaatctttctagtatatacctgtcgagaagctattatattctattatgaatttgtaatcctactttggcttgttaagaagcttttattgggagataagttcagattgctgaaggaaacagtcttaacgagcttctacgaatcgagctcgagtcgagccgagccttgatcgagctcgaaccgagcctaccttcaagctcgaaggtaatgctgggctcggctcgagctcggctcgagcctgtactgagctcgagcttaggtaggtaagctcgctcgagctcagctcgttgacagcccta