Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127518_Y3551_DEL0406220

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-3B1: KHAO YAI GUANG | Os127518RS1

Os XI-1B: Y3551 | Y3551

Chr04

2729813

2730869

SV Length:

Query Start:

Query End:

Allele sv Count:

1057 bp

2380088

37

Gene_id	Chromosome	Start	End
OsY3551G0406207800.01	Chr04	2379928	2383105

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127518_117425_DEL0406670	Chr04	2729813	2730869	2284321	2284321	1057
127518_117534_DEL0407280	Chr04	2729813	2730869	2207685	2207685	1057
127518_125619_DEL0406670	Chr04	2729813	2730869	2246588	2246588	1057
127518_125827_DEL0406530	Chr04	2729813	2730869	2179386	2179386	1057
127518_127564_DEL0406200	Chr04	2729813	2730869	2299397	2299397	1057
127518_127652_DEL0406860	Chr04	2729813	2730869	2022233	2022233	1057
127518_127742_DEL0406560	Chr04	2729813	2730869	2160080	2160080	1057
127518_128077_DEL0406370	Chr04	2729813	2730869	1955545	1955545	1057
127518_132278_DEL0407340	Chr04	2729813	2730869	2074593	2074593	1057
127518_132424_DEL0406620	Chr04	2729813	2730869	2224318	2224318	1057
127518_Azucena_DEL0406570	Chr04	2729813	2730869	2077470	2077470	1057
127518_CN1_DEL0406360	Chr04	2729813	2730869	2428175	2428175	1057
127518_D62_DEL0406310	Chr04	2729813	2730869	2776407	2776407	1057
127518_DG_DEL0406730	Chr04	2729813	2730869	2243698	2243698	1057
127518_FH838_DEL0406380	Chr04	2729813	2730869	2300849	2300849	1057
127518_FS32_DEL0406200	Chr04	2729813	2730869	2261970	2261970	1057
127518_G46_DEL0406050	Chr04	2729813	2730869	2443963	2443963	1057
127518_G630_DEL0405750	Chr04	2729813	2730869	2407704	2407704	1057
127518_G8_DEL0406920	Chr04	2729813	2730869	2129293	2129293	1057
127518_HZ_DEL0406520	Chr04	2729813	2730869	2163346	2163346	1057
127518_II32_DEL0406460	Chr04	2729813	2730869	2079779	2079779	1057
127518_IR64_DEL0406480	Chr04	2729813	2730869	2297783	2297783	1057
127518_Lemont_DEL0406860	Chr04	2729813	2730869	2054109	2054109	1057
127518_LK638S_DEL0404980	Chr04	2729813	2730869	2056531	2056531	1057
127518_R498_DEL0405900	Chr04	2729813	2730869	2405576	2405576	1057
127518_R527_DEL0405920	Chr04	2729813	2730869	2394047	2394047	1057
127518_R9311_DEL0406440	Chr04	2729813	2730869	2204993	2204993	1057
127518_S548_DEL0406160	Chr04	2729813	2730869	2392866	2392866	1057
127518_TM_DEL0405970	Chr04	2729813	2730869	2154894	2154894	1057
127518_Tumba_DEL0406330	Chr04	2729813	2730869	2113458	2113458	1057
127518_WSSM_DEL0406500	Chr04	2729813	2730869	2115124	2115124	1057
127518_XL628S_DEL0406820	Chr04	2729813	2730869	2516470	2516470	1057
127518_Y3551_DEL0406220	Chr04	2729813	2730869	2380088	2380088	1057
127518_YX1_DEL0406150	Chr04	2729813	2730869	2275696	2275696	1057
127518_ZS97RS3_DEL0406420	Chr04	2729813	2730869	2350862	2350862	1057
127518_OglaRS2_DEL0406790	Chr04	2729813	2730869	2013904	2013904	1057
127518_MH63RS3_DEL0406140	Chr04	2729813	2730869	2397794	2397794	1057

>127518_Y3551_DEL0406220
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