Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127518_127742_DEL1117320

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-3B1: KHAO YAI GUANG | Os127518RS1

Os XI-1B2: PR 106 | Os127742RS1

Chr11

14554004

14555024

SV Length:

Query Start:

Query End:

Allele sv Count:

1017 bp

11428249

11429265

23 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127518_02428_DEL1123730	Chr11	14554004	14555022	6278023	6279048	1026
127518_117425_DEL1126220	Chr11	14554004	14555024	28841813	28842834	1022
127518_117534_DEL1122330	Chr11	14554004	14555024	10926018	10927038	1021
127518_127652_DEL1127660	Chr11	14554004	14566678	12593066	12605681	12616
127518_127742_DEL1117320	Chr11	14554004	14555024	11428249	11429265	1017
127518_Azucena_DEL1128810	Chr11	14554004	14555024	20744932	20745952	1021
127518_DHX2_DEL1124830	Chr11	14554004	14555024	26677282	26678303	1022
127518_G630_DEL1118120	Chr11	14554004	14566678	13519090	13536113	17024
127518_Kosh_DEL1125540	Chr11	14554004	14555024	26669683	26670703	1021
127518_KY131_DEL1128210	Chr11	14554004	14555024	26998741	26999762	1022
127518_LJ_DEL1127920	Chr11	14554004	14555024	26663008	26664031	1024
127518_Nipponbare_DEL1127150	Chr11	14554004	14555024	27055627	27056648	1022
127518_R498_DEL1115210	Chr11	14554004	14566678	13012254	13029277	17024
127518_R527_DEL1116870	Chr11	14554004	14555024	8336016	8337034	1019
127518_R9311_DEL1117390	Chr11	14554004	14566678	13190762	13207757	16996
127518_S548_DEL1115990	Chr11	14554004	14566678	13213465	13230490	17026
127518_TM_DEL1121800	Chr11	14554004	14555024	29831178	29832202	1025
127518_Tumba_DEL1117050	Chr11	14554004	14566677	13447034	13447034	12674
127518_WSSM_DEL1121230	Chr11	14554004	14555024	14389148	14390168	1021
127518_YX1_DEL1114330	Chr11	14554004	14566678	12783430	12800447	17018
127518_ZH11_DEL1125940	Chr11	14554004	14555024	27058421	27059442	1022
127518_OglaRS2_DEL1133140	Chr11	14554004	14555764	1661837	1663570	1734
127518_MH63RS3_DEL1118730	Chr11	14554004	14566678	13292255	13309280	17026

>127518_127742_DEL1117320
tgtcacgcccagaaattcccgaatagaattccaagcagaatgtgcattaaaatccccgtccaggaccagccggggtacacaaacgacaatgttgacatacagatccacgtcttacaaacatcataaagtcttacataaatgcagcggaaaacaaaagaaactggagctaagccttgactaaactgcagcgggaacaccactccacaggcatcctcgacggcacggacgaagcctactcctcggagaaaccttcatctgacccgaactcgaactctggggttgggaaaagtagagcaagactgagtactacccactgtactcagcaagtcataccggaatagaggtatgatgcagggaatcatcaagaagctaaagtggttcatttgcataaagcgagcatttaaaacagagattgaaagatttaaacagttgtaataattaagcagtattaatcatccactgtccaacgctacaccacgttgcaacaggcccaaccatccacctaaactatccaaattaaaggattacactaaggtgagactaatcacggtgaatctggttgaccgcccataaccgcgggcacggctattcgaatagttttactctgatcagaggtgtacaactgtacccacaagacacagccccacgacacgtttccgtgcgccgacatgccaccacgacataccggaaagaggccgtgacaggacccttcgcataaccccctctagccaagcacaccacacctcaggtttcacccccgtccccagcgggcaacgggcagtcccctctcgtgcctaggtgaatccggaagcgacagaggccgtcgcagggcccgccccgctccatcacgcccacccttgcctggatgcgtcgactagaggaaagctacactacaagcccagccgttgcccacgctggcttgtggtaagtacgataaattcttccagggcatcccgcgaaccggtccttaactgccatgggtgcgaccagcaaaaccatgcacccacagcccaccat