Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 125827_IR64_DEL0301520

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-3B2: LIU XU | Os125827RS1

Os XI-1B1: IR 64 | OsIR64RS1

Chr03

1830395

1833217

SV Length:

Query Start:

Query End:

Allele sv Count:

1313 bp

1794885

1796197

14

Gene_id	Chromosome	Start	End
OsIR64_03g0002430	Chr03	1785145	1799195
OsIR64_03g0002440	Chr03	1796138	1801212

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
125827_117425_DEL0302250	Chr03	1830395	1833219	1812710	1814023	1314
125827_117534_DEL0301700	Chr03	1830395	1833219	1813754	1815067	1314
125827_127652_DEL0301650	Chr03	1830395	1833219	1775251	1776564	1314
125827_Basmati1_DEL0301510	Chr03	1830395	1833219	1814006	1815319	1314
125827_G8_DEL0300560	Chr03	1830395	1833217	1830200	1831512	1313
125827_IR64_DEL0301520	Chr03	1830395	1833217	1794885	1796197	1313
125827_J4155_DEL0301100	Chr03	1830395	1833217	1834343	1835655	1313
125827_J4155S_DEL0301160	Chr03	1830395	1833217	1846716	1848028	1313
125827_S548_DEL0300410	Chr03	1830395	1833217	1829189	1830501	1313
125827_Tumba_DEL0300500	Chr03	1830395	1833219	1835278	1836591	1314
125827_WSSM_DEL0301100	Chr03	1830395	1833218	1790849	1792161	1313
125827_XL628S_DEL0301050	Chr03	1830395	1833217	1847313	1848625	1313
125827_Y3551_DEL0300650	Chr03	1830395	1833217	1821484	1822796	1313
125827_Y58S_DEL0300530	Chr03	1830395	1833219	1835316	1836629	1314

>125827_IR64_DEL0301520
AAAGAGAGAAGCCAATTTTAAGTGGTATATAAGAGAGCCGGTTAATTTAGAGTGGCATATAAGGGATTCTCTCTTCTCTTAACTATGCAAATTCCATTCAAATTTAGCCAAAATCCCCGAAATTTCGGTTGTATATATCGGTGCAAAGGACTAACTGCAGGCTGCGTCGTCGTCTTCCTCGCGATCGTTTTCACTTTTTTTTCAGGCCATCTGTACGTGAAGAGTGACGTGTACTGCTTCGGCGTGGTGCTGCTTGAGCTGCTCACGGGGCTGAGGGCTCACGACCTGAACCGGCCGAGCCACCAGCAGAATCTGGTGGAGTGGGCGCGGCCGTACATCGCCGGCGGCAAGAAGCTGGCGGGGCTGATGGACCCGCGGCTCGCCGGGGACTACCCGGCCAAGGCGGCGGCGCGGGCCGCCAAGCTCGCCGACAAGTGCCTCTGCGGCGACCCCAAGAGCCGGCCGTCCATGGACGACGTCGTCGTCGCGCTCCAGGAGATCGAGTCCGTCGGCACCGCGCGGCCGGCGGCGGCGAAGCTGCCGCCGCGGGCGCCGCCGCCCGCTGCGCACCGGTCGCCGCATCGTAATCCTTATTCCAAGCCGCGATGAGCTTTGGGATTATCTGCATACTAACATGGATTTGAAATTGAATTGAATTGAATTGTATTGATTCTTTTTTCTTTCTACGGCGCGTGTCATCTTTAAACAATCTCACTTTGCAAATGATTATACTCCTCTGATCCATGAGATTAGCCGTAGTGATGAACCGAATCGAGTCACTGTCCAGGAGAGCGACAAGATGACCCAGACCTGTGCTTTCAGGAGAAGCACATATACAGGATGTGATTTCTGAGATAAATGTGTAGACTTGAGGATAAACATACGACGGGTTTAGCTCTGAAACCATAACATGCCAGAATTTGTGTTTAGAGAATAGATGAAAAAACAAAAAAACCACGGACGCCAACCGACAAGATCACTTTTAAGAGTTGATTACAAAAGCATAACAATTAGACGTTACTCCTGTGCGACTAGGAGATTAATTCAAATATATTTTCATACTGAAATTTGGGACACATATTTAACAACTATAAAAGGGAGAAAAAGAGAGCTTCCGATCTGTTCCAATGTTACAAAGGGTGTGTTTAGTTCACGTCAAAATTGGAAGTTTAATTGGAATTGAAACGATGTGACGAAAAAGTTAAAAGTTTATGTGTGTAGGAAAGTTTTGATGTGATAGAAAAGTTGGAAGTTTGAAGAAAAACCAGGCCAAAGTAGCACAATTCTTACATTTCTACCGTACTGTACATGAT